BLASTX nr result
ID: Coptis23_contig00036053
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00036053
(330 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002520932.1| pentatricopeptide repeat-containing protein,... 123 2e-26
ref|XP_002886104.1| pentatricopeptide repeat-containing protein ... 108 5e-22
emb|CBI37746.3| unnamed protein product [Vitis vinifera] 107 8e-22
ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containi... 107 8e-22
emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera] 107 1e-21
>ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539898|gb|EEF41477.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 757
Score = 123 bits (308), Expect = 2e-26
Identities = 64/109 (58%), Positives = 82/109 (75%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
+A+SVF M ++DSVSWN++IHGCLD G EGL F+ AR FEPN+STLVL++QACR
Sbjct: 117 TAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINARVAGFEPNISTLVLLVQACR 176
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
+LRA EGL +HG+LIQSGL A+ SVQNS L Y++ ++ R LFDE
Sbjct: 177 SLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYADV-DMDCARILFDE 224
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/108 (30%), Positives = 54/108 (50%)
Frame = +3
Query: 6 ALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACRN 185
A VF+ +D V W+ +I G G E + +F K + PN T++ +LQAC
Sbjct: 421 AWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQACSV 480
Query: 186 LRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
+ HG I+ GL A ++V +++ YS+ G +E RK F++
Sbjct: 481 SAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQ 528
>ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331944|gb|EFH62363.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 723
Score = 108 bits (270), Expect = 5e-22
Identities = 60/109 (55%), Positives = 75/109 (68%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
S L F CM ++DSVSWN+++ G LD G +EGL F K R FEPNVSTLVLV+ ACR
Sbjct: 87 SGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRVWGFEPNVSTLVLVIHACR 146
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
+L +++G IHG++I+SG SVQNS+L YSEF L RKLFDE
Sbjct: 147 SL--WFDGEKIHGYVIRSGFWRISSVQNSILCLYSEFDSLS-ARKLFDE 192
Score = 55.8 bits (133), Expect = 3e-06
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVK-ARGQVFEPNVSTLVLVLQAC 179
SA +F M +D +SW++VI + S GL +F + R EP+ T+ VL+AC
Sbjct: 185 SARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKAC 244
Query: 180 RNLRAFYEGLGIHGFLIQSGL-LANISVQNSLLGFYSEFGGLEFPRKLFDE 329
L G +HGF I+ G L ++ V+NSL+ YS+ + ++FDE
Sbjct: 245 AVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDE 295
>emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 107 bits (268), Expect = 8e-22
Identities = 60/109 (55%), Positives = 75/109 (68%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
SAL VF M ++DSVSWNI+IHG L G +GL F +AR FEPNVSTLVL + ACR
Sbjct: 88 SALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACR 147
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
+L A EGL +HG++I+SG L SVQNSLL Y++ +E +LFDE
Sbjct: 148 SLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDE 195
Score = 55.5 bits (132), Expect = 5e-06
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +3
Query: 6 ALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQV-FEPNVSTLVLVLQACR 182
A +F M +D +SW+++I G + +G K L +F++ E + T+V VL+AC
Sbjct: 189 AEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACA 248
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
N G +HG +I GL ++ V NS++ YS+ E K F+E
Sbjct: 249 NTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNE 297
Score = 55.1 bits (131), Expect = 6e-06
Identities = 36/108 (33%), Positives = 55/108 (50%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
SA F M +++VSWN +I G + + + E L +F F + TLV +LQ+C+
Sbjct: 290 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 349
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFD 326
++ IH +I+ G N V NSL+ YS+ +E KLFD
Sbjct: 350 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFD 397
>ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 107 bits (268), Expect = 8e-22
Identities = 60/109 (55%), Positives = 75/109 (68%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
SAL VF M ++DSVSWNI+IHG L G +GL F +AR FEPNVSTLVL + ACR
Sbjct: 102 SALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACR 161
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
+L A EGL +HG++I+SG L SVQNSLL Y++ +E +LFDE
Sbjct: 162 SLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDE 209
Score = 55.5 bits (132), Expect = 5e-06
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +3
Query: 6 ALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQV-FEPNVSTLVLVLQACR 182
A +F M +D +SW+++I G + +G K L +F++ E + T+V VL+AC
Sbjct: 203 AEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACA 262
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
N G +HG +I GL ++ V NS++ YS+ E K F+E
Sbjct: 263 NTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNE 311
Score = 55.1 bits (131), Expect = 6e-06
Identities = 36/108 (33%), Positives = 55/108 (50%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
SA F M +++VSWN +I G + + + E L +F F + TLV +LQ+C+
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFD 326
++ IH +I+ G N V NSL+ YS+ +E KLFD
Sbjct: 364 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFD 411
>emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
Length = 1007
Score = 107 bits (266), Expect = 1e-21
Identities = 60/109 (55%), Positives = 74/109 (67%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
SAL VF M ++DSVSWNI+IHG L G GL F +AR FEPNVSTLVL + ACR
Sbjct: 102 SALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARVIAFEPNVSTLVLAIHACR 161
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFDE 329
+L A EGL +HG++I+SG L SVQNSLL Y++ +E +LFDE
Sbjct: 162 SLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDE 209
Score = 55.1 bits (131), Expect = 6e-06
Identities = 36/108 (33%), Positives = 55/108 (50%)
Frame = +3
Query: 3 SALSVFACMVNKDSVSWNIVIHGCLDSGPYKEGLCMFVKARGQVFEPNVSTLVLVLQACR 182
SA F M +++VSWN +I G + + + E L +F F + TLV +LQ+C+
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363
Query: 183 NLRAFYEGLGIHGFLIQSGLLANISVQNSLLGFYSEFGGLEFPRKLFD 326
++ IH +I+ G N V NSL+ YS+ +E KLFD
Sbjct: 364 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFD 411