BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035986
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...    99   3e-19
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18
emb|CBI22269.3| unnamed protein product [Vitis vinifera]               91   1e-16
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...    90   2e-16
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi...    84   9e-15

>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 48/91 (52%), Positives = 61/91 (67%)
 Frame = +1

Query: 1   YDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAK 180
           Y+QME +GLK D+GT                    H S+ER+RF+ ST V NAL+DMYAK
Sbjct: 299 YNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAK 358

Query: 181 CGSLDKAMKVFDGMVERDVVSWNSILQGLAM 273
           CGSL+ A+ +F GMV +DVVSWN+I+QGLAM
Sbjct: 359 CGSLENALSIFHGMVRKDVVSWNAIIQGLAM 389



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +1

Query: 7   QMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAKCG 186
           +M+ SG+  DN T+                   H  VE+  F     V N+L+D Y KCG
Sbjct: 105 EMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCG 164

Query: 187 --SLDKAMKVFDGMVERDVVSWNSILQGL 267
              +  A KVF+ M ERD VSWNS++ GL
Sbjct: 165 LDGVAAARKVFEVMAERDTVSWNSMIGGL 193


>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
           predicted protein [Populus trichocarpa]
          Length = 427

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 46/91 (50%), Positives = 61/91 (67%)
 Frame = +1

Query: 1   YDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAK 180
           ++QME +GLKPD+GT                    HTS+ER R++ S  V NALVDMYAK
Sbjct: 128 FEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAK 187

Query: 181 CGSLDKAMKVFDGMVERDVVSWNSILQGLAM 273
           CG +D+A+ VF+GM ++D+VSWN +LQGLAM
Sbjct: 188 CGQVDRALSVFNGMSKKDLVSWNCMLQGLAM 218


>emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 44/85 (51%), Positives = 56/85 (65%)
 Frame = +1

Query: 19  SGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAKCGSLDK 198
           +GLK D+GT                    H S+ER+RF+ ST V NAL+DMYAKCGSL+ 
Sbjct: 220 AGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLEN 279

Query: 199 AMKVFDGMVERDVVSWNSILQGLAM 273
           A+ +F GMV +DVVSWN+I+QGLAM
Sbjct: 280 ALSIFHGMVRKDVVSWNAIIQGLAM 304



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/86 (37%), Positives = 43/86 (50%)
 Frame = +1

Query: 7   QMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAKCG 186
           +M+ SG+  DN T+                   H  VE+  F     V N+L+D Y K G
Sbjct: 105 EMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLG 164

Query: 187 SLDKAMKVFDGMVERDVVSWNSILQG 264
            L +A ++FD M ERD VSWN+IL G
Sbjct: 165 ELGEARRLFDEMPERDTVSWNTILDG 190


>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 57/91 (62%)
 Frame = +1

Query: 1   YDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAK 180
           Y+QME +GLKPD+GT                    H S+++ R + S  V NALVDMYAK
Sbjct: 305 YNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAK 364

Query: 181 CGSLDKAMKVFDGMVERDVVSWNSILQGLAM 273
           CG +DKA+ +F+ M  RD+VSWN +LQGLAM
Sbjct: 365 CGRVDKALSIFNEMSMRDLVSWNCMLQGLAM 395



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +1

Query: 10  MERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAKCGS 189
           M+++GL  DN T+                   H  VE+  F     V N+L+D Y+KCG 
Sbjct: 112 MQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGL 171

Query: 190 L--DKAMKVFDGMVERDVVSWNSILQGL 267
           L  + AMK+F  M E+D+VSWNS++ GL
Sbjct: 172 LGVNYAMKLFMEMGEKDLVSWNSMIGGL 199


>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
 Frame = +1

Query: 1   YDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAK 180
           Y +ME +GL+PD+G                     H S+ R RFR  T+V NA +DMYAK
Sbjct: 304 YGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAK 363

Query: 181 CGSLDKAMKVFDGMV-ERDVVSWNSILQGLAM 273
           CG LD A  VF GM+ ++DVVSWNS++QG AM
Sbjct: 364 CGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAM 395



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
 Frame = +1

Query: 7   QMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXXHTSVERSRFRHSTQVCNALVDMYAKCG 186
           QM+++GL PDN T+                   H  VE+  F     V N+L+D Y++CG
Sbjct: 110 QMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCG 169

Query: 187 S--LDKAMKVFDGMVERDVVSWNSILQGL 267
           S  LD AM +F  M ERDVV+WNS++ GL
Sbjct: 170 SAGLDGAMSLFLAMKERDVVTWNSMIGGL 198