BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035984
         (683 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...   103   3e-20
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    99   1e-18
ref|XP_002280424.1| PREDICTED: F-box/kelch-repeat protein At3g23...    87   3e-15
emb|CAN75235.1| hypothetical protein VITISV_008502 [Vitis vinifera]    87   3e-15
ref|XP_002525780.1| ubiquitin-protein ligase, putative [Ricinus ...    86   5e-15

>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score =  103 bits (257), Expect = 3e-20
 Identities = 77/255 (30%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
 Frame = +3

Query: 3   GLLCLTYCKEFQRKVLCLWNPTTGDYMEFPTRDHCPFSSLCCGHKTVFSVGFNPHVNSYF 182
           GLLCL+         L ++NP TG Y E P     P        + VF  GFNP  N Y 
Sbjct: 129 GLLCLS--DSLFNDSLYIYNPFTGRYKELPKSLQYP------DQEVVFGFGFNPKTNEYK 180

Query: 183 VIRIENH---------SLTCDAPCSHVYIFYLAYRSWWHVQEICYKIPPKQG-ALVNGAL 332
           VIRI  +         S     P S V I  L    W  + ++ Y++  +    LVNG L
Sbjct: 181 VIRIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETLVNGRL 240

Query: 333 HWLGASCTGTSYDLVIAFVIKGRKFQEVPLPYFGDMRTFSMDITELGG--ELCLFCDFKS 506
           HW+   C       +++F +   +F+EVP P  G +      +  L G   + ++C++  
Sbjct: 241 HWVSRPCRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVYCNY-G 299

Query: 507 SVTLWLMKDYSVKESWTKMFSIKKPIGEFHTRNLLIP---------------LCFATSGA 641
            + +W+MK+Y+VKESW K ++I   + +   +NL+ P               LC   +G 
Sbjct: 300 RLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGE 359

Query: 642 LIL-IKVRTLVLYDP 683
           ++L  K R LV YDP
Sbjct: 360 ILLEYKNRALVSYDP 374


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 98.6 bits (244), Expect = 1e-18
 Identities = 78/255 (30%), Positives = 115/255 (45%), Gaps = 28/255 (10%)
 Frame = +3

Query: 3   GLLCLTYCKEFQRKVLCLWNPTTGDYMEFPTRDHCPFSSLCCGHKTVFSVGFNPHVNSYF 182
           GLLCL+         L ++NP TG Y E P     P   +  G       GFNP    Y 
Sbjct: 130 GLLCLS--DSLYNDSLYIYNPFTGCYKELPKSLQYPDQEVVSGF------GFNPKTKEYK 181

Query: 183 VIRIENH---------SLTCDAPCSHVYIFYLAYRSWWHVQEICYKIPPK-QGALVNGAL 332
           VIRI  +         S     P S V I  L    W  + ++ Y++  +  GALVNG L
Sbjct: 182 VIRIVYYRNGHGGYPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGALVNGRL 241

Query: 333 HWLGASCTGTSYDLVIAFVIKGRKFQEVPLPYFGDMRTFSMDITELGGEL--CLFCDFKS 506
           HW+   C       +++F +   +F+EV  P  G +   +  +  L G L   ++C++  
Sbjct: 242 HWISRPCRNKPARRLVSFDLTDEQFREVSKPDCGGLNRCNYHLVVLRGCLSAAVYCNY-G 300

Query: 507 SVTLWLMKDYSVKESWTKMFSI----KKPIGEFHTRNLLI-----------PLCFATSGA 641
            + +W+MK+Y+VKESW K ++I     K + +   R L I            LC   +G 
Sbjct: 301 RLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVLKNGE 360

Query: 642 LIL-IKVRTLVLYDP 683
           ++L  K R LV YDP
Sbjct: 361 ILLEYKNRVLVSYDP 375


>ref|XP_002280424.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Vitis
           vinifera]
          Length = 397

 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 2/228 (0%)
 Frame = +3

Query: 3   GLLCLTYC-KEFQRKVLCLWNPTTGDYMEFPTRDHCPFSSLCCGHKTVFSVGFNPHVNSY 179
           GL+C  +C ++ +  ++ +WNP+T ++   P     P S + C H   +  G++   + Y
Sbjct: 129 GLVC--FCIRDTENDIIFVWNPSTREFRRLP-----PISFMQCFHLVAYGFGYDSIADDY 181

Query: 180 FVIRIENHSLTCDAPCSHVYIFYLAYRSWWHVQEI-CYKIPPKQGALVNGALHWLGASCT 356
            V R+  + +        V +F L    W  ++   CY    + G  VNG++++ G   +
Sbjct: 182 KVTRVGCYCIGRYYEYQ-VRVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDS 240

Query: 357 GTSYDLVIAFVIKGRKFQEVPLPYFGDMRTFSMDITELGGELCLFCDFKSSVTLWLMKDY 536
              Y  V+   +    ++ VPLP   D     M I  LGG  C   D   +V +W+M+ Y
Sbjct: 241 ENYYWSVVGLDLASESYRMVPLPDCADPNVKPM-IMALGGRFCTIFDNDEAVDVWVMEQY 299

Query: 537 SVKESWTKMFSIKKPIGEFHTRNLLIPLCFATSGALILIKVRTLVLYD 680
            VK+SW K+ ++     +  T +   P+ F   GA+++     LVLY+
Sbjct: 300 GVKKSWNKLVTVPY-FPDPMTVDCTKPVFFLRDGAILMEFYGLLVLYN 346


>emb|CAN75235.1| hypothetical protein VITISV_008502 [Vitis vinifera]
          Length = 453

 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 2/228 (0%)
 Frame = +3

Query: 3   GLLCLTYC-KEFQRKVLCLWNPTTGDYMEFPTRDHCPFSSLCCGHKTVFSVGFNPHVNSY 179
           GL+C  +C ++ +  ++ +WNP+T ++   P     P S + C H   +  G++   + Y
Sbjct: 129 GLVC--FCIRDTENDIIFVWNPSTREFRRLP-----PISFMQCFHLVAYGFGYDSIADDY 181

Query: 180 FVIRIENHSLTCDAPCSHVYIFYLAYRSWWHVQEI-CYKIPPKQGALVNGALHWLGASCT 356
            V R+  + +        V +F L    W  ++   CY    + G  VNG++++ G   +
Sbjct: 182 KVTRVGCYCIGRYYEYQ-VRVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDS 240

Query: 357 GTSYDLVIAFVIKGRKFQEVPLPYFGDMRTFSMDITELGGELCLFCDFKSSVTLWLMKDY 536
              Y  V+   +    ++ VPLP   D     M I  LGG  C   D   +V +W+M+ Y
Sbjct: 241 ENYYWSVVGLDLASESYRMVPLPDCADPNVKPM-IMALGGRFCTIFDNDEAVDVWVMEQY 299

Query: 537 SVKESWTKMFSIKKPIGEFHTRNLLIPLCFATSGALILIKVRTLVLYD 680
            VK+SW K+ ++     +  T +   P+ F   GA+++     LVLY+
Sbjct: 300 GVKKSWNKLVTVPY-FPDPMTVDCTKPVFFLRDGAILMEFYGLLVLYN 346


>ref|XP_002525780.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534930|gb|EEF36616.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 351

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 15/241 (6%)
 Frame = +3

Query: 3   GLLCLTYCKEFQ------RKVLCLWNPTTGDYMEFPTRDHCPFSSLCCGHKTVFSVGFNP 164
           GL+CL   +         R+ L LWNPTT D+   PT      S +      V   G++ 
Sbjct: 101 GLICLDIHERLNFYGLCNRRDLYLWNPTTNDFKALPTT-----SDISIMFNNV-GFGYDN 154

Query: 165 HVNSYFVIRIENHSLTCDAP-CSHVYIFYLAYRSW--WHVQEI-CYKIPPKQGALVNGAL 332
            ++ Y V+ I+    TC+     ++ IF L   SW    +Q++ C +I   +G L NGAL
Sbjct: 155 SIDDYKVVVIDRS--TCELKRTRYIMIFTLKTNSWRRKEIQDVKCSRIQSGKGILCNGAL 212

Query: 333 HWLGASCTGTSYDLVIAFVIKGRKFQEVPLPYFGDMRTFSMDITELGGELCLF--CDFKS 506
           HW   S + T  D+V+AF +   +  E+P P   D  +   DI    G++CLF     + 
Sbjct: 213 HW--TSHSETHGDIVLAFNLAMEEIAELPQP---DTNSRLDDIAASDGKICLFYLLPREW 267

Query: 507 SVTLWLMKDYSVKESWTKMFSIKKPIGEFHTRNLLI---PLCFATSGALILIKVRTLVLY 677
            V +W+MK+Y VK S+TK+ +  + +     R+L         ++ G L+   +   +LY
Sbjct: 268 RVEIWIMKEYGVKASYTKLTTETRDVTFGPLRSLSENGGAAAISSGGKLMKYSLEKAILY 327

Query: 678 D 680
           D
Sbjct: 328 D 328