BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035948
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ...    98   8e-19
ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
ref|XP_002522354.1| pentatricopeptide repeat-containing protein,...    93   3e-17
gb|AFW59852.1| putative pentatricopeptide repeat family protein ...    88   6e-16

>ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  102 bits (254), Expect = 3e-20
 Identities = 49/84 (58%), Positives = 60/84 (71%)
 Frame = +2

Query: 5   VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 184
           +F ++E PDLVSWNS+IAGY EN DGE AM++F+QL +M   KPD+YT+A  ISA    P
Sbjct: 273 IFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIISATGVFP 332

Query: 185 SLDYGSPLHAHVEKAGFGSSIFVG 256
           S  YG  LHA V K GF  S+FVG
Sbjct: 333 SSSYGKSLHAEVIKTGFERSVFVG 356


>ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513169|gb|AES94792.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 985

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = +2

Query: 2   LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDL 181
           ++F ++E  DLVSWNS+I+GY EN DGE AM++F+QL  +   KPD+YT+A  ISA    
Sbjct: 542 MIFSRMEKWDLVSWNSMISGYFENEDGEKAMNLFVQLKALCFPKPDDYTYAGIISATGAF 601

Query: 182 PSLDYGSPLHAHVEKAGFGSSIFVG 256
           P   YG PLH  V KAGF  S+FVG
Sbjct: 602 PCFSYGKPLHGQVIKAGFVRSVFVG 626


>ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|222856691|gb|EEE94238.1|
           predicted protein [Populus trichocarpa]
          Length = 561

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +2

Query: 5   VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 184
           VF KIE PDLVSWNS+I+GY EN +G  AM++F+QL  + + KPDEYTFA  ISA     
Sbjct: 168 VFNKIENPDLVSWNSMISGYAENGEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFS 227

Query: 185 SLDYGSPLHAHVEKAGFGSSIFVG 256
           +  YG PLHA V K G   S+F+G
Sbjct: 228 ATCYGKPLHAQVLKVGSERSVFIG 251


>ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538432|gb|EEF40038.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 704

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 41/84 (48%), Positives = 58/84 (69%)
 Frame = +2

Query: 5   VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 184
           +F +I+ P L+SWNS+I+ + +N +GE AM +F++L  M+  KPDEYTF   ISA  +  
Sbjct: 268 LFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFR 327

Query: 185 SLDYGSPLHAHVEKAGFGSSIFVG 256
           + DYG PLHA V KAG   S+F+G
Sbjct: 328 ATDYGQPLHAQVIKAGLQWSVFIG 351


>gb|AFW59852.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 554

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAV--IKPDEYTFATTISAVR 175
           LVFR+IE PDLVSWN++I+G+   +DG TA+  F++L  ++   + PDEYTFA  ++A  
Sbjct: 115 LVFRRIETPDLVSWNTIISGFSGVADGWTAVQAFVKLKAVSSEWLAPDEYTFAAVVAAAA 174

Query: 176 DLPSLDYGSPLHAHVEKAGFGSSIFV 253
            LP++  G PLHA V KAG  SS+FV
Sbjct: 175 SLPAMCSGKPLHACVIKAGLESSVFV 200