BLASTX nr result

ID: Coptis23_contig00035781 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035781
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28895.3| unnamed protein product [Vitis vinifera]              164   7e-39
ref|XP_003635366.1| PREDICTED: uncharacterized protein LOC100266...   163   1e-38
ref|XP_002317226.1| predicted protein [Populus trichocarpa] gi|2...   163   1e-38
emb|CAN73939.1| hypothetical protein VITISV_031601 [Vitis vinifera]   162   3e-38
ref|XP_002305013.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36

>emb|CBI28895.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  164 bits (415), Expect = 7e-39
 Identities = 84/129 (65%), Positives = 99/129 (76%), Gaps = 4/129 (3%)
 Frame = -2

Query: 377 PPPPMVPSRGSVPSP--PMSLSNGSAPPPPP--GVVKALHPKKAHTKLKRSSNMGNLYRV 210
           PPPP++PS+GSVP P  PM ++ G+APPPPP   V KAL P+KA+ KLKRS++MGNLYR 
Sbjct: 324 PPPPILPSKGSVPPPLAPMPMTKGAAPPPPPPLAVAKALRPRKANNKLKRSTHMGNLYRT 383

Query: 209 LKGKVEGSSQDDKTSSGRKSIGASARGSKQSMAGALAEMTKRSSYFQQI*EDVQKHAKTV 30
           LKGKVEGSS   K S GR S    + G KQ MA ALAEMTKRS+YFQQI EDVQKH K +
Sbjct: 384 LKGKVEGSSLQGKNSQGRTSAIGDSAGGKQGMADALAEMTKRSAYFQQIEEDVQKHGKVI 443

Query: 29  MEMKTAITS 3
           ME+K AI+S
Sbjct: 444 MEIKVAISS 452


>ref|XP_003635366.1| PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera]
          Length = 1206

 Score =  163 bits (413), Expect = 1e-38
 Identities = 85/136 (62%), Positives = 101/136 (74%), Gaps = 4/136 (2%)
 Frame = -2

Query: 398 LRQDGSAPPPPMVPSRGS---VPSPPMSLSNGSAPPPPP-GVVKALHPKKAHTKLKRSSN 231
           L    + PPPP +P +G+    P PPM L+ G APPPPP G  K L P+KA TKLKRS+ 
Sbjct: 440 LSSGAAPPPPPFMPLKGTGPLPPPPPMLLTKGGAPPPPPPGGAKNLRPRKAATKLKRSTQ 499

Query: 230 MGNLYRVLKGKVEGSSQDDKTSSGRKSIGASARGSKQSMAGALAEMTKRSSYFQQI*EDV 51
           MGNLYRVLKGKVEGSS   ++S+GRK +  S+ G KQ MA ALAEMTKRS+YFQQI EDV
Sbjct: 500 MGNLYRVLKGKVEGSSLQGQSSNGRKGLAGSSAGGKQGMADALAEMTKRSAYFQQIEEDV 559

Query: 50  QKHAKTVMEMKTAITS 3
           QKHAK++ME+K AI S
Sbjct: 560 QKHAKSIMELKAAIGS 575



 Score =  142 bits (357), Expect = 4e-32
 Identities = 75/143 (52%), Positives = 105/143 (73%), Gaps = 13/143 (9%)
 Frame = -2

Query: 392  QDGSAPPPP---MVPSRGSVPSPP--MSLSNGSAPPPPP---GVVKALHPKKAHTKLKRS 237
            ++G+APPPP   M+P +GSVP+PP  + L NG+APP PP   G  K L PK+  T+LKRS
Sbjct: 890  KNGAAPPPPPLPMMPLKGSVPAPPPPVPLKNGAAPPLPPPLFGAAKNLGPKRPTTRLKRS 949

Query: 236  SNMGNLYRVLKGKVEGSSQDD-----KTSSGRKSIGASARGSKQSMAGALAEMTKRSSYF 72
            + MGNLYRVLK K+EG++Q+      ++S  R+ +  ++ G KQ MA  +AE+TK+SSYF
Sbjct: 950  AQMGNLYRVLKKKMEGTNQEGPIPEGRSSQARRGLTGNSNGGKQGMADTIAEITKKSSYF 1009

Query: 71   QQI*EDVQKHAKTVMEMKTAITS 3
            QQI +DV+KHAK++ME+K AIT+
Sbjct: 1010 QQIEKDVKKHAKSIMEVKGAITN 1032


>ref|XP_002317226.1| predicted protein [Populus trichocarpa] gi|222860291|gb|EEE97838.1|
           predicted protein [Populus trichocarpa]
          Length = 792

 Score =  163 bits (413), Expect = 1e-38
 Identities = 84/129 (65%), Positives = 98/129 (75%), Gaps = 4/129 (3%)
 Frame = -2

Query: 377 PPPPMVPSRGSVP---SPPMSLSNGSAPPPPP-GVVKALHPKKAHTKLKRSSNMGNLYRV 210
           PPPPM+ S+GS+P    PPM L NG+APPPPP G  ++L PKK  TKLKRSS MG LYR 
Sbjct: 464 PPPPMMSSKGSMPLPPPPPMPLGNGAAPPPPPPGAARSLRPKKTQTKLKRSSQMGTLYRA 523

Query: 209 LKGKVEGSSQDDKTSSGRKSIGASARGSKQSMAGALAEMTKRSSYFQQI*EDVQKHAKTV 30
           LKGKVEG +Q  K+SSGRK   +S+ G KQ MA ALAE+TKRS+YFQQI EDVQKHAK V
Sbjct: 524 LKGKVEGGNQVTKSSSGRKGPASSSAGGKQGMADALAEITKRSAYFQQIEEDVQKHAKAV 583

Query: 29  MEMKTAITS 3
            E+K  I+S
Sbjct: 584 TELKATISS 592


>emb|CAN73939.1| hypothetical protein VITISV_031601 [Vitis vinifera]
          Length = 1452

 Score =  162 bits (409), Expect = 3e-38
 Identities = 83/129 (64%), Positives = 98/129 (75%), Gaps = 4/129 (3%)
 Frame = -2

Query: 377 PPPPMVPSRGSVPSP--PMSLSNGSAPPPPP--GVVKALHPKKAHTKLKRSSNMGNLYRV 210
           PPPP++PS+GSVP P  PM ++ G+APPPPP   V KAL P+KA+ KLKRS++MGNLYR 
Sbjct: 582 PPPPILPSKGSVPPPLAPMPMTKGAAPPPPPPLAVAKALRPRKANNKLKRSTHMGNLYRT 641

Query: 209 LKGKVEGSSQDDKTSSGRKSIGASARGSKQSMAGALAEMTKRSSYFQQI*EDVQKHAKTV 30
           LKGKVEGSS   K S GR S    + G KQ MA ALAEMTKRS+YFQQI EDVQKH K +
Sbjct: 642 LKGKVEGSSLQGKNSQGRTSAIGDSAGGKQGMADALAEMTKRSAYFQQIEEDVQKHGKVI 701

Query: 29  MEMKTAITS 3
            E+K AI+S
Sbjct: 702 XEIKVAISS 710


>ref|XP_002305013.1| predicted protein [Populus trichocarpa] gi|222847977|gb|EEE85524.1|
           predicted protein [Populus trichocarpa]
          Length = 788

 Score =  157 bits (396), Expect = 1e-36
 Identities = 82/134 (61%), Positives = 103/134 (76%), Gaps = 7/134 (5%)
 Frame = -2

Query: 383 SAPPPP---MVPSRGSVP---SPPMSLSNGSAPPPPP-GVVKALHPKKAHTKLKRSSNMG 225
           +APPPP   M+ S+G++P    PPM L NG+APPPPP G  ++L PKKA TKLKRSS MG
Sbjct: 490 NAPPPPPPLMMSSKGTMPLPPPPPMPLGNGAAPPPPPPGAARSLRPKKAQTKLKRSSQMG 549

Query: 224 NLYRVLKGKVEGSSQDDKTSSGRKSIGASARGSKQSMAGALAEMTKRSSYFQQI*EDVQK 45
           NLYRVLKGKVEG +Q  K+ +GRK   +S+ G KQ MA ALAE+TKRS+YFQQI EDVQK
Sbjct: 550 NLYRVLKGKVEGGNQLTKSPTGRKGPASSSAGGKQGMADALAEITKRSAYFQQIEEDVQK 609

Query: 44  HAKTVMEMKTAITS 3
           ++K + E+K AI++
Sbjct: 610 YSKEITELKAAIST 623


Top