BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035695
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303023.1| predicted protein [Populus trichocarpa] gi|2...   154   7e-36
ref|NP_200728.2| pentatricopeptide repeat-containing protein [Ar...   148   4e-34
ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arab...   144   6e-33
ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat...   143   1e-32
emb|CBI18728.3| unnamed protein product [Vitis vinifera]              143   1e-32

>ref|XP_002303023.1| predicted protein [Populus trichocarpa] gi|222844749|gb|EEE82296.1|
           predicted protein [Populus trichocarpa]
          Length = 621

 Score =  154 bits (389), Expect = 7e-36
 Identities = 65/106 (61%), Positives = 86/106 (81%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTVVSYNSMLAGYAMHGKSIEAITTFEDMVSSGLSPSSIS 141
           MYS+CG +D+A+RVF +MK++ V++YNSM+ G+A+HGKS+EA+  F  ++  G +PSS++
Sbjct: 293 MYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVT 352

Query: 140 FVAVLNACSHGGFVDMGIEKFQSMKKVYGIEPQIEHYGCMVDLFGR 3
           FV VLNACSHGG  ++G E F SM K YGIEPQIEHYGCMVDL GR
Sbjct: 353 FVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGR 398



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 22/128 (17%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTVVS------------------YNSMLAGYAMHGKSIEA 195
           +Y KCG+ + A RVF EM +R VV+                  + +M+ G   +G+S  A
Sbjct: 174 LYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRA 233

Query: 194 ITTFEDMVSSGLSPSSISFVAVLNACSHGGFVDMG--IEKFQSMKKVYGIEPQIEHY--G 27
           +  F +M    + P+ ++ V VL+ACS  G + +G  +  +    ++     ++ H+  G
Sbjct: 234 LEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRI-----ELNHFVGG 288

Query: 26  CMVDLFGR 3
            +++++ R
Sbjct: 289 ALINMYSR 296


>ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g59200, chloroplastic; Flags: Precursor
           gi|9759241|dbj|BAB09765.1| unnamed protein product
           [Arabidopsis thaliana] gi|332009773|gb|AED97156.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 544

 Score =  148 bits (374), Expect = 4e-34
 Identities = 63/106 (59%), Positives = 86/106 (81%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTVVSYNSMLAGYAMHGKSIEAITTFEDMVSSGLSPSSIS 141
           MYS+CG +++A RVF  M+D+ V+SYN+M++G AMHG S+EAI  F DMV+ G  P+ ++
Sbjct: 299 MYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVT 358

Query: 140 FVAVLNACSHGGFVDMGIEKFQSMKKVYGIEPQIEHYGCMVDLFGR 3
            VA+LNACSHGG +D+G+E F SMK+V+ +EPQIEHYGC+VDL GR
Sbjct: 359 LVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGR 404


>ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata] gi|297310446|gb|EFH40870.1| hypothetical protein
           ARALYDRAFT_496037 [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  144 bits (364), Expect = 6e-33
 Identities = 62/106 (58%), Positives = 85/106 (80%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTVVSYNSMLAGYAMHGKSIEAITTFEDMVSSGLSPSSIS 141
           MYS+CG ++ A+RVF  M+D+ V+SYN+M++G AMHG S+EAI  F DMV+ G  P+ ++
Sbjct: 289 MYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFRPNQVT 348

Query: 140 FVAVLNACSHGGFVDMGIEKFQSMKKVYGIEPQIEHYGCMVDLFGR 3
            VA+LNACSHGG +D+G+E F SM +V+ +EPQIEHYGC+VDL GR
Sbjct: 349 LVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGR 394


>ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  143 bits (361), Expect = 1e-32
 Identities = 64/106 (60%), Positives = 84/106 (79%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTVVSYNSMLAGYAMHGKSIEAITTFEDMVSSGLSPSSIS 141
           MYS+CGS+D+A+ VF EMKDR V++YN+M++G +M+GKS +AI  F  M+   L P++++
Sbjct: 322 MYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVT 381

Query: 140 FVAVLNACSHGGFVDMGIEKFQSMKKVYGIEPQIEHYGCMVDLFGR 3
           FV VLNACSHGG VD G + F SM + YG+EPQIEHYGCMVDL GR
Sbjct: 382 FVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427


>emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  143 bits (361), Expect = 1e-32
 Identities = 64/106 (60%), Positives = 84/106 (79%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTVVSYNSMLAGYAMHGKSIEAITTFEDMVSSGLSPSSIS 141
           MYS+CGS+D+A+ VF EMKDR V++YN+M++G +M+GKS +AI  F  M+   L P++++
Sbjct: 279 MYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVT 338

Query: 140 FVAVLNACSHGGFVDMGIEKFQSMKKVYGIEPQIEHYGCMVDLFGR 3
           FV VLNACSHGG VD G + F SM + YG+EPQIEHYGCMVDL GR
Sbjct: 339 FVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 384



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 320 MYSKCGSLDKAERVFHEMKDRTV----VSYNSMLAGYAMHGKSIEAITTFEDMVSSGLSP 153
           +Y KCG L  A RVF EM +  V    V + +M+ G+  + +   A+  F  M    + P
Sbjct: 174 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 233

Query: 152 SSISFVAVLNACSHGGFVDMGIEKFQSMKKVYGIEPQIEHYGCMVDLFGR 3
           +  + V VL+ACS  G +++G      M+K + IE  +     +++++ R
Sbjct: 234 NEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSR 282