BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035677
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...   127   9e-28
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...   115   4e-24
ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containi...   115   4e-24
ref|XP_003625900.1| Pentatricopeptide repeat-containing protein ...   114   6e-24
ref|XP_002320353.1| predicted protein [Populus trichocarpa] gi|2...   103   1e-20

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  127 bits (319), Expect = 9e-28
 Identities = 57/91 (62%), Positives = 71/91 (78%)
 Frame = +3

Query: 6   TSLSIYSYMNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLL 185
           T  SIY++M+ NSI PNN+T+P +LK+L+D K + +GQC+HT   K G   DIYV NSLL
Sbjct: 92  TPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCIHTHVVKLGQFDDIYVQNSLL 151

Query: 186 NVYSSCGDMHTCERLFDEMPKRDVVSWTILI 278
           NVY+SCGDM  C R+FDEMP RDVVSWT+LI
Sbjct: 152 NVYASCGDMGLCMRVFDEMPHRDVVSWTVLI 182


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  115 bits (288), Expect = 4e-24
 Identities = 52/91 (57%), Positives = 69/91 (75%)
 Frame = +3

Query: 6   TSLSIYSYMNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLL 185
           T L +Y++MN+NSI PNNYT+P +LK+L+D K +  GQ VHT   K GH  D+YV N+L+
Sbjct: 93  TPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLM 152

Query: 186 NVYSSCGDMHTCERLFDEMPKRDVVSWTILI 278
           +VY+SCG M  C+++FDEM   DVVSWTILI
Sbjct: 153 DVYASCGKMGLCKKVFDEMLHTDVVSWTILI 183


>ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  115 bits (288), Expect = 4e-24
 Identities = 52/91 (57%), Positives = 69/91 (75%)
 Frame = +3

Query: 6   TSLSIYSYMNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLL 185
           T L +Y++MN+NSI PNNYT+P +LK+L+D K +  GQ VHT   K GH  D+YV N+L+
Sbjct: 93  TPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLM 152

Query: 186 NVYSSCGDMHTCERLFDEMPKRDVVSWTILI 278
           +VY+SCG M  C+++FDEM   DVVSWTILI
Sbjct: 153 DVYASCGKMGLCKKVFDEMLHTDVVSWTILI 183


>ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500915|gb|AES82118.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 467

 Score =  114 bits (286), Expect = 6e-24
 Identities = 53/91 (58%), Positives = 70/91 (76%)
 Frame = +3

Query: 6   TSLSIYSYMNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLL 185
           T LS+YS+M+KNSI PNN+T+P + K+LSD     Q QCV+T   K G++ DIYV NSLL
Sbjct: 92  TPLSLYSHMHKNSILPNNFTFPFLFKSLSDSHDFVQSQCVYTHVIKLGYVNDIYVNNSLL 151

Query: 186 NVYSSCGDMHTCERLFDEMPKRDVVSWTILI 278
           +VY+S G +  C +LFDEMP+RDVVSWT++I
Sbjct: 152 DVYASYGCLELCRQLFDEMPQRDVVSWTVMI 182


>ref|XP_002320353.1| predicted protein [Populus trichocarpa] gi|222861126|gb|EEE98668.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/83 (57%), Positives = 60/83 (72%)
 Frame = +3

Query: 30  MNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGD 209
           M+ NSI PNNYT+P + K+LSD +   + QCVH    + GH+ DIYV NSLL+VY+SCG 
Sbjct: 1   MHYNSILPNNYTFPFLFKSLSDCRDYLKCQCVHAHVIRLGHLNDIYVQNSLLDVYASCGY 60

Query: 210 MHTCERLFDEMPKRDVVSWTILI 278
           M  C  +FDEM  RDVVSWT+LI
Sbjct: 61  MGLCREVFDEMSDRDVVSWTVLI 83