BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035663
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)...    87   1e-15
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera...    70   2e-10
ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus...    64   2e-08
gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]        62   4e-08
gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]        61   8e-08

>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
           gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
           (mitochondrion) [Phoenix dactylifera]
          Length = 875

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 47/97 (48%), Positives = 66/97 (68%)
 Frame = -1

Query: 291 PFQFMAKVMSNEITHTHERIEGFYRVPVTQDASASAYQFMSYFLLNLELGMETNLIMAFH 112
           PFQF+AK++S +I      +  +++VPVTQDASASAYQ MSY LLN E+G  TNL+ +  
Sbjct: 460 PFQFLAKILSKDI------VSNYHKVPVTQDASASAYQIMSYLLLNQEMGRRTNLLPS-- 511

Query: 111 DNNPLFDLYEILQCQLLEFLFKELDSDKYEIIKSGLT 1
            +  + D+Y  LQ +L +FL   LD++KY +I S LT
Sbjct: 512 SDGQIQDVYMCLQEELKKFLVTRLDANKYAVILSMLT 548


>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
           gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
           polymerase. This is a family of single chain RNA
           polymerases; pfam00940 [Vitis vinifera]
           gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
           [Vitis vinifera]
          Length = 975

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 10/107 (9%)
 Frame = -1

Query: 291 PFQFMAKVMSNEITHTHERIEGFYRVPVTQDASASAYQFMSYFLLNLELGMETNLI---- 124
           P+QF++KV+  E  +    I+    +P+TQDASASAYQ MSYFLL+ +L ++TNLI    
Sbjct: 584 PYQFISKVLCIESNNKSNLIQ----IPITQDASASAYQIMSYFLLDNDLALKTNLIPYID 639

Query: 123 ------MAFHDNNPLFDLYEILQCQLLEFLFKELDSDKYEIIKSGLT 1
                   F DN  + D+Y IL  +L  +  KEL ++  +I+   LT
Sbjct: 640 YHYSPEYDFSDNKKIKDIYTILLEELKVYFRKELTNNLADIVCPRLT 686


>ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
           gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
          Length = 1078

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
 Frame = -1

Query: 297 DCPFQFMAKVMSN-EITHTHERIEGFY---------RVPVTQDASASAYQFMSYFLLNLE 148
           D PFQF++K +        +E+   FY          +PV+QDASASAYQ MS+ LLN +
Sbjct: 582 DDPFQFLSKALYLLYFISENEKGTSFYSSDLRYLLNEIPVSQDASASAYQIMSFLLLNED 641

Query: 147 LGMETNLIMAFHDNNPLFDLYEILQCQLLEFLFKELDSDKY 25
           LG  TN+I    D   + DLY  L+ +L+E+L K   S+ Y
Sbjct: 642 LGKGTNMIYGSEDK--IQDLYSSLKDELVEYLLKTKCSNDY 680


>gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]
          Length = 371

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/70 (47%), Positives = 49/70 (70%)
 Frame = -1

Query: 234 IEGFYRVPVTQDASASAYQFMSYFLLNLELGMETNLIMAFHDNNPLFDLYEILQCQLLEF 55
           I  F  +P+TQDASASAYQ M+YFLL+  + M+TNLI+   D   + D+YE+ + + LE+
Sbjct: 2   INAFQEIPITQDASASAYQIMAYFLLDETMAMKTNLIINKFD--WIVDIYEMFKEECLEY 59

Query: 54  LFKELDSDKY 25
           + K  +SDK+
Sbjct: 60  IHKN-ESDKH 68


>gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]
          Length = 1053

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/95 (37%), Positives = 61/95 (64%), Gaps = 7/95 (7%)
 Frame = -1

Query: 288 FQFMAKV--MSNEITHTHE-----RIEGFYRVPVTQDASASAYQFMSYFLLNLELGMETN 130
           FQF++ +  + N I +  +      I  F  +P+TQDASASAYQ M+YFLL+  + M+TN
Sbjct: 659 FQFISNIYFLYNPIIYNKKDKENFMINAFQEIPITQDASASAYQIMAYFLLDEGMAMKTN 718

Query: 129 LIMAFHDNNPLFDLYEILQCQLLEFLFKELDSDKY 25
           LI+  +  + + D+YE+ + + LE++ K  ++DK+
Sbjct: 719 LII--NKLDWIIDIYEMFKEECLEYIHKN-ENDKH 750