BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035640
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15289.3| unnamed protein product [Vitis vinifera]              228   5e-58
ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containi...   228   5e-58
ref|XP_002511505.1| pentatricopeptide repeat-containing protein,...   222   2e-56
ref|XP_002887557.1| pentatricopeptide repeat-containing protein ...   217   9e-55
ref|NP_177613.1| pentatricopeptide repeat-containing protein [Ar...   216   1e-54

>emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  228 bits (580), Expect = 5e-58
 Identities = 108/134 (80%), Positives = 117/134 (87%)
 Frame = -2

Query: 402 IMIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLK 223
           IMIALQAKARNYP AL+LYRDMQ  GFQPDKVTYSIVMEVLGHCGHLEE E +FTEMK K
Sbjct: 533 IMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRK 592

Query: 222 NWVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDA 43
           NWVPDEPVYGLLVDLWGK G V+++  WYQ ML+AG+ PNVPTCNSLLSAF+RVHR SDA
Sbjct: 593 NWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDA 652

Query: 42  CNVLHSMPRLGLNP 1
            N+L SM RLGL P
Sbjct: 653 YNLLQSMLRLGLQP 666



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/120 (27%), Positives = 61/120 (50%)
 Frame = -2

Query: 360 ALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKNWVPDEPVYGLLVD 181
           A+ ++  MQ  G QPD+VTY  ++++    G L+    ++ +M+  +  PD   Y ++++
Sbjct: 442 AVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIIN 501

Query: 180 LWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDACNVLHSMPRLGLNP 1
             GKAG +  A   + EM+D G  PN+ T N +++   +   +  A  +   M   G  P
Sbjct: 502 CLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQP 561



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/128 (29%), Positives = 61/128 (47%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           +I + AKA     AL +Y+ MQ     PD  TYS+++  LG  GHL     +F EM  + 
Sbjct: 464 LIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQG 523

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
            VP+   Y +++ L  KA     A   Y++M +AG +P+  T + ++          +A 
Sbjct: 524 CVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAE 583

Query: 39  NVLHSMPR 16
            +   M R
Sbjct: 584 AIFTEMKR 591



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 37/133 (27%), Positives = 63/133 (47%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           M+ +  +AR +    +L  +M   G QP+ VTY+ ++   G   +L E   VF  M+   
Sbjct: 394 MVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAG 453

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
             PD   Y  L+D+  KAG +D A   YQ+M +A + P+  T + +++   +    + A 
Sbjct: 454 CQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAH 513

Query: 39  NVLHSMPRLGLNP 1
            +   M   G  P
Sbjct: 514 KLFCEMVDQGCVP 526


>ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  228 bits (580), Expect = 5e-58
 Identities = 108/134 (80%), Positives = 117/134 (87%)
 Frame = -2

Query: 402 IMIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLK 223
           IMIALQAKARNYP AL+LYRDMQ  GFQPDKVTYSIVMEVLGHCGHLEE E +FTEMK K
Sbjct: 524 IMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRK 583

Query: 222 NWVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDA 43
           NWVPDEPVYGLLVDLWGK G V+++  WYQ ML+AG+ PNVPTCNSLLSAF+RVHR SDA
Sbjct: 584 NWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDA 643

Query: 42  CNVLHSMPRLGLNP 1
            N+L SM RLGL P
Sbjct: 644 YNLLQSMLRLGLQP 657



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/120 (27%), Positives = 61/120 (50%)
 Frame = -2

Query: 360 ALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKNWVPDEPVYGLLVD 181
           A+ ++  MQ  G QPD+VTY  ++++    G L+    ++ +M+  +  PD   Y ++++
Sbjct: 433 AVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIIN 492

Query: 180 LWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDACNVLHSMPRLGLNP 1
             GKAG +  A   + EM+D G  PN+ T N +++   +   +  A  +   M   G  P
Sbjct: 493 CLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQP 552



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/128 (29%), Positives = 61/128 (47%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           +I + AKA     AL +Y+ MQ     PD  TYS+++  LG  GHL     +F EM  + 
Sbjct: 455 LIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQG 514

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
            VP+   Y +++ L  KA     A   Y++M +AG +P+  T + ++          +A 
Sbjct: 515 CVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAE 574

Query: 39  NVLHSMPR 16
            +   M R
Sbjct: 575 AIFTEMKR 582



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 37/133 (27%), Positives = 63/133 (47%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           M+ +  +AR +    +L  +M   G QP+ VTY+ ++   G   +L E   VF  M+   
Sbjct: 385 MVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAG 444

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
             PD   Y  L+D+  KAG +D A   YQ+M +A + P+  T + +++   +    + A 
Sbjct: 445 CQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAH 504

Query: 39  NVLHSMPRLGLNP 1
            +   M   G  P
Sbjct: 505 KLFCEMVDQGCVP 517


>ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550620|gb|EEF52107.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 876

 Score =  222 bits (566), Expect = 2e-56
 Identities = 105/134 (78%), Positives = 118/134 (88%)
 Frame = -2

Query: 402 IMIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLK 223
           IMIALQAKARNY  AL+LYRDMQ+ GFQPDKVTYSIVMEVLGHCG+L+E E VF+EMK K
Sbjct: 525 IMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRK 584

Query: 222 NWVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDA 43
           NWVPDEPVYGLLVDLWGKAG V++A  WYQ ML+ G+RPNVPTCNSLLSAF+RVH+ +DA
Sbjct: 585 NWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADA 644

Query: 42  CNVLHSMPRLGLNP 1
            N+L SM  LGLNP
Sbjct: 645 YNLLQSMLELGLNP 658



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 40/128 (31%), Positives = 62/128 (48%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           +I + AKA     AL++Y+ MQ  G  PD  TYS+++  LG  GHL     +F EM  + 
Sbjct: 456 LIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQG 515

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
            VP+   Y +++ L  KA     A   Y++M  AG +P+  T + ++          +A 
Sbjct: 516 CVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAE 575

Query: 39  NVLHSMPR 16
            V   M R
Sbjct: 576 AVFSEMKR 583



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/120 (26%), Positives = 61/120 (50%)
 Frame = -2

Query: 360 ALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKNWVPDEPVYGLLVD 181
           A+ ++ +MQ VG +PD+VTY  ++++    G L+    ++  M+     PD   Y ++++
Sbjct: 434 AVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIIN 493

Query: 180 LWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDACNVLHSMPRLGLNP 1
             GKAG +  A   + EM++ G  PN+ T N +++   +   +  A  +   M   G  P
Sbjct: 494 CLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQP 553



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/133 (27%), Positives = 62/133 (46%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           M+ +  +A+ +    +L   M   G QP+ VTY+ ++   G   +L +   VF EM+   
Sbjct: 386 MVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVG 445

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
             PD   Y  L+D+  KAG +D A   YQ M  AG+ P+  T + +++   +    + A 
Sbjct: 446 CEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAH 505

Query: 39  NVLHSMPRLGLNP 1
            +   M   G  P
Sbjct: 506 KLFCEMVEQGCVP 518


>ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297333398|gb|EFH63816.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 845

 Score =  217 bits (552), Expect = 9e-55
 Identities = 105/134 (78%), Positives = 114/134 (85%)
 Frame = -2

Query: 402 IMIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLK 223
           IMIAL AKARNY  AL+LYRDMQ  GFQPDKVTYSIVMEVLGHCG LEE E VF EM+ K
Sbjct: 494 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 553

Query: 222 NWVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDA 43
           NWVPDEPVYGLLVDLWGKAG V++A  WYQEML AG+RPNVPTCNSLLS F+RVHR S+A
Sbjct: 554 NWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEA 613

Query: 42  CNVLHSMPRLGLNP 1
            N+L SM  LGL+P
Sbjct: 614 YNLLQSMLALGLHP 627



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/120 (25%), Positives = 59/120 (49%)
 Frame = -2

Query: 360 ALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKNWVPDEPVYGLLVD 181
           A+ +++ MQ  G +PD+VTY  ++++    G L+    ++  M+     PD   Y ++++
Sbjct: 403 AMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIIN 462

Query: 180 LWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDACNVLHSMPRLGLNP 1
             GKAG +  A   + EM+  G  PN+ T N +++   +   +  A  +   M   G  P
Sbjct: 463 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 522



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 36/133 (27%), Positives = 61/133 (45%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           M+    +A+ +    +L  +M   G +P+ VTY+ ++   G   +L E   VF +M+   
Sbjct: 355 MVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAG 414

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
             PD   Y  L+D+  KAG +D A   YQ M  AG+ P+  T + +++   +      A 
Sbjct: 415 CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAH 474

Query: 39  NVLHSMPRLGLNP 1
            +   M   G  P
Sbjct: 475 RLFCEMVGQGCTP 487


>ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g74750 gi|5882748|gb|AAD55301.1|AC008263_32 Contains
           2 PF|01535 DUF domains [Arabidopsis thaliana]
           gi|332197508|gb|AEE35629.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  216 bits (551), Expect = 1e-54
 Identities = 105/134 (78%), Positives = 113/134 (84%)
 Frame = -2

Query: 402 IMIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLK 223
           IMIAL AKARNY  AL+LYRDMQ  GFQPDKVTYSIVMEVLGHCG LEE E VF EM+ K
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 563

Query: 222 NWVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDA 43
           NWVPDEPVYGLLVDLWGKAG VD+A  WYQ ML AG+RPNVPTCNSLLS F+RVHR S+A
Sbjct: 564 NWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEA 623

Query: 42  CNVLHSMPRLGLNP 1
            N+L SM  LGL+P
Sbjct: 624 YNLLQSMLALGLHP 637



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/120 (25%), Positives = 58/120 (48%)
 Frame = -2

Query: 360 ALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKNWVPDEPVYGLLVD 181
           A+ ++  MQ  G +PD+VTY  ++++    G L+    ++  M+     PD   Y ++++
Sbjct: 413 AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472

Query: 180 LWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDACNVLHSMPRLGLNP 1
             GKAG +  A   + EM+  G  PN+ T N +++   +   +  A  +   M   G  P
Sbjct: 473 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 532



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/133 (27%), Positives = 63/133 (47%)
 Frame = -2

Query: 399 MIALQAKARNYPCALQLYRDMQTVGFQPDKVTYSIVMEVLGHCGHLEEVEIVFTEMKLKN 220
           M+    +A+ +    +L  +M   G +P+ VTY+ ++   G   +L+E   VF +M+   
Sbjct: 365 MVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAG 424

Query: 219 WVPDEPVYGLLVDLWGKAGEVDRAQGWYQEMLDAGVRPNVPTCNSLLSAFIRVHRFSDAC 40
             PD   Y  L+D+  KAG +D A   YQ M +AG+ P+  T + +++   +      A 
Sbjct: 425 CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAH 484

Query: 39  NVLHSMPRLGLNP 1
            +   M   G  P
Sbjct: 485 RLFCEMVGQGCTP 497