BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035639
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ...    61   1e-07
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    56   3e-06
ref|XP_003637494.1| F-box protein [Medicago truncatula] gi|35550...    56   3e-06
dbj|BAK69455.1| S-locus F-box brothers3-S6, partial [Pyrus pyrif...    56   4e-06
dbj|BAK69454.1| S-locus F-box brothers3-S5, partial [Pyrus pyrif...    56   4e-06

>ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 414

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
 Frame = +2

Query: 26  HIYSVEVNSLTKIFKINDPFGESTSTS--LKLIGSCNGIVCFVKGS-LVCLLNPCTKEYK 196
           + Y+V ++SL  I K+ +P    T  S  +K++GSCNG++CF   S  + L+NP T+++K
Sbjct: 67  YFYNVNLDSLNSIIKLENPIKGPTDASHNIKIVGSCNGLLCFGNASGRITLMNPSTRKHK 126

Query: 197 IVTF------ENASGFHSNAVYGFGYDHTSEDYKLV 286
           ++ F                 +GFG D   +DYK++
Sbjct: 127 VLPFLRMDASVKGKSVWGAWAFGFGCDSVHDDYKVI 162


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
 Frame = +2

Query: 23  SHIYSVEVNSLTKIFKINDPFGESTSTSLKLIGSCNGIVCFVK-GSLVCLLNPCTKEYKI 199
           S +Y +++NS+ ++ +++ P     S  +K++GSCNG++C       +   NP  ++++I
Sbjct: 59  SRLYELDLNSMDRVKELDHPL-MCYSNRIKVLGSCNGLLCICNIADDIAFWNPTIRKHRI 117

Query: 200 VTFENASGFHSNA-----------VYGFGYDHTSEDYKLV 286
           +  E      +N            VYGFGYD  ++DYKLV
Sbjct: 118 IPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLV 157


>ref|XP_003637494.1| F-box protein [Medicago truncatula] gi|355503429|gb|AES84632.1|
           F-box protein [Medicago truncatula]
          Length = 381

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
 Frame = +2

Query: 5   LFRYSKSHIYSVEVNSLTKIFKINDPFGESTSTSLKLIGSCNGIVCFVKGSLVCLLNPCT 184
           + R++       + ++LT   K+N PF + ++  + L+GSCNG++C      +   NP  
Sbjct: 54  ILRHNSDFYQINDFSNLTTAVKLNPPF-KGSNNFISLVGSCNGLLCLFSDGEIAFWNPTI 112

Query: 185 KEYKIVT---------FENASGFHSNAVYGFGYDHTSEDYKLV---CFVNSEVS 310
            +++I+           E  + +    VYGFG+D  ++DYKL+   CFV  + S
Sbjct: 113 CKHRIIPSLPIPTPQHSEPNNIYADFCVYGFGFDPLTDDYKLLTIFCFVEIQQS 166


>dbj|BAK69455.1| S-locus F-box brothers3-S6, partial [Pyrus pyrifolia]
          Length = 184

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
 Frame = +2

Query: 71  INDPFGESTSTSLKLIGSCNGIVCFVKGSLVCLLNPCTKEYKIV------------TFEN 214
           +N PF       +++ G CNGIVC ++G  V L NP T+E++++             FE 
Sbjct: 1   LNIPFSRDDHNPVQIHGYCNGIVCLIEGDNVLLCNPSTREFRLLPNSCLLVPHPEGKFEL 60

Query: 215 ASGFHSNAVYGFGYDHTSEDYKLVCFVNS 301
            + FH     GFGYD  + +YK+V  V +
Sbjct: 61  ETTFHG---MGFGYDCKANEYKVVQIVEN 86


>dbj|BAK69454.1| S-locus F-box brothers3-S5, partial [Pyrus pyrifolia]
          Length = 184

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
 Frame = +2

Query: 71  INDPFGESTSTSLKLIGSCNGIVCFVKGSLVCLLNPCTKEYKIV------------TFEN 214
           +N PF       +++ G CNGIVC ++G  V L NP T+E++++             FE 
Sbjct: 1   LNIPFSRDDHNPVQIHGYCNGIVCLIEGDNVLLCNPSTREFRLLPNSCLLVPHPEGKFEL 60

Query: 215 ASGFHSNAVYGFGYDHTSEDYKLVCFVNS 301
            + FH     GFGYD  + +YK+V  V +
Sbjct: 61  ETTFHG---MGFGYDCKANEYKVVQIVEN 86