BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035566
         (387 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23
emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   111   5e-23
dbj|BAJ86699.1| predicted protein [Hordeum vulgare subsp. vulgare]    100   2e-19
ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    95   7e-18

>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
           gi|296089781|emb|CBI39600.3| unnamed protein product
           [Vitis vinifera]
          Length = 498

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/121 (45%), Positives = 77/121 (63%)
 Frame = -2

Query: 365 AVVAGTRRRGRDSILYHRLAAIHGGNDATNVAETLDEWLNDGNKLTKYHMIGFVNELRKY 186
           +    T  + +++ LY +L+A+ G     +VAETLD+W+ +G  + ++ MI  VN+LR++
Sbjct: 21  STATATAAKDKEASLYWKLSALRGTEG--DVAETLDKWVKEGKSVKRFDMISCVNQLRRF 78

Query: 185 KKYNLAIQILEWWEKRGQDLTPGDHAIRLELLSKIEGVESAEKYFGSLPEHAKNKSTYGA 6
           KKY  A QI EW EK   DL   D AIR++LL+K EG+  AE YF SL E AK   TYGA
Sbjct: 79  KKYKHAAQIYEWMEKSKNDLNNADRAIRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGA 138

Query: 5   L 3
           L
Sbjct: 139 L 139


>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  111 bits (278), Expect = 5e-23
 Identities = 55/116 (47%), Positives = 76/116 (65%)
 Frame = -2

Query: 350 TRRRGRDSILYHRLAAIHGGNDATNVAETLDEWLNDGNKLTKYHMIGFVNELRKYKKYNL 171
           T  + +++ LY +L+A+ G     +VAETLD+W+ +G  + ++ MI  VN+LR++KKY  
Sbjct: 22  TATKDKEASLYWKLSALRGTEG--DVAETLDKWVKEGKSVKRFDMISCVNQLRRFKKYKH 79

Query: 170 AIQILEWWEKRGQDLTPGDHAIRLELLSKIEGVESAEKYFGSLPEHAKNKSTYGAL 3
           A QI EW EK   DL   D AIR++LL+K EG+  AE YF SL E AK   TYGAL
Sbjct: 80  AAQIYEWMEKSKNDLNNADRAIRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGAL 135


>dbj|BAJ86699.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 493

 Score =  100 bits (248), Expect = 2e-19
 Identities = 46/121 (38%), Positives = 77/121 (63%), Gaps = 3/121 (2%)
 Frame = -2

Query: 356 AGTRRRGRDSI---LYHRLAAIHGGNDATNVAETLDEWLNDGNKLTKYHMIGFVNELRKY 186
           AG  RRG +     LY R++ +  G     VA  +DEWL    + ++  ++ +V EL ++
Sbjct: 37  AGPERRGLEPAWVPLYKRISKVSQGKPPGTVAAEMDEWLRQRRRPSQLQVLAYVRELTRF 96

Query: 185 KKYNLAIQILEWWEKRGQDLTPGDHAIRLELLSKIEGVESAEKYFGSLPEHAKNKSTYGA 6
           KK   A+++L+W E RG +L+PG  A+RL+L+SK+ G+++AE+YF S+P+ +K+  TY  
Sbjct: 97  KKNESALELLDWMESRGANLSPGHQAMRLDLISKVHGIQAAEEYFWSIPDISKSVKTYSC 156

Query: 5   L 3
           L
Sbjct: 157 L 157


>ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
           gi|449518825|ref|XP_004166436.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
          Length = 474

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 49/107 (45%), Positives = 76/107 (71%)
 Frame = -2

Query: 323 LYHRLAAIHGGNDATNVAETLDEWLNDGNKLTKYHMIGFVNELRKYKKYNLAIQILEWWE 144
           LY RL+A+  G    +VA+T+++++ +GN + KY +   + ELRKY++Y+  +QI+EW E
Sbjct: 11  LYPRLSAL--GATGGSVAKTINQFIMEGNIVKKYELEKCIKELRKYRRYHHCLQIMEWME 68

Query: 143 KRGQDLTPGDHAIRLELLSKIEGVESAEKYFGSLPEHAKNKSTYGAL 3
            R  + +  D+A+RL+L+SK+ GV +AEKYF  LP  AKN+ TYGAL
Sbjct: 69  TRKINYSFTDYALRLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGAL 115


>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 48/126 (38%), Positives = 77/126 (61%)
 Frame = -2

Query: 380 TTTSDAVVAGTRRRGRDSILYHRLAAIHGGNDATNVAETLDEWLNDGNKLTKYHMIGFVN 201
           T   +  V    R  R   LYHRL+A+  G    +VA+TL+E + +G  + K+ +   + 
Sbjct: 27  TEPEEVAVQAASRSVRQPRLYHRLSAL--GATGGSVADTLNEHIKEGKLIAKHELSSCIK 84

Query: 200 ELRKYKKYNLAIQILEWWEKRGQDLTPGDHAIRLELLSKIEGVESAEKYFGSLPEHAKNK 21
           +LRKY+++  A++I++W E R    +  D+A+RL+LLSK +G+ +AE+YF +L   AKN 
Sbjct: 85  QLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLSPSAKNL 144

Query: 20  STYGAL 3
            TYG L
Sbjct: 145 LTYGTL 150