BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035350
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR67407.1| integrase [Cucumis melo subsp. melo]                   108   5e-22
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...   100   1e-19
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...    98   6e-19
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...    98   6e-19
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...    98   8e-19

>gb|ABR67407.1| integrase [Cucumis melo subsp. melo]
          Length = 1281

 Score =  108 bits (270), Expect = 5e-22
 Identities = 50/105 (47%), Positives = 73/105 (69%)
 Frame = -2

Query: 322  SAPPTSSRDDDYESPPRKVRSIRELYNSTEQIELDDVVYFAFFAGEDPISFDDASREETW 143
            S+  TSS   + E  PR++RSI+E+YN+T +I +D    FA FAG  P++FD+A ++E W
Sbjct: 753  SSSSTSSSTSNDEISPRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFDEAIQDEKW 812

Query: 142  KQAMIEEIKSIEKNGTWELTDLPPHKIPIGVKWVYKIKKNPDGSI 8
            K AM +EI +I +N TWEL +LP +K  +GVKWVY+ K   DG++
Sbjct: 813  KIAMDQEIDAIRRNETWELMELPTNKQALGVKWVYRTKLKSDGNV 857


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
           copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  100 bits (249), Expect = 1e-19
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 12/136 (8%)
 Frame = -2

Query: 373 YN*FSYARS--EEVGSHTDSAP---PTSSRDDDYESP-------PRKVRSIRELYNSTEQ 230
           Y+ F Y     EE  +  DS P   PT S ++   S        PR++R+I+ELY+ TE 
Sbjct: 456 YDFFPYFEEIDEEALTPNDSTPALSPTPSTNEASSSSEGSSSERPRRMRNIQELYDETEV 515

Query: 229 IELDDVVYFAFFAGEDPISFDDASREETWKQAMIEEIKSIEKNGTWELTDLPPHKIPIGV 50
           I  +D+  F  F    P++FD+A +++ W+QAM EEIK+IEKN TWEL+ LP     IGV
Sbjct: 516 I--NDL--FCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNTWELSSLPKGHEAIGV 571

Query: 49  KWVYKIKKNPDGSINK 2
           KWV+KIKKN  G + +
Sbjct: 572 KWVFKIKKNAKGEVER 587


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
            gi|31429795|gb|AAP51797.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1350

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 50/109 (45%), Positives = 67/109 (61%)
 Frame = -2

Query: 328  TDSAPPTSSRDDDYESPPRKVRSIRELYNSTEQIELDDVVYFAFFAGEDPISFDDASREE 149
            +DS+P +  +    ES PR+VRS+ EL  ST Q    +   F  ++  +P SF +A + +
Sbjct: 720  SDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHD 779

Query: 148  TWKQAMIEEIKSIEKNGTWELTDLPPHKIPIGVKWVYKIKKNPDGSINK 2
             W +AM +EI  IEKN TWEL D P  +  IGVKWVYK K NPDGS+ K
Sbjct: 780  NWIKAMEDEIHMIEKNNTWELVDRPRDRKVIGVKWVYKTKLNPDGSVQK 828


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 50/109 (45%), Positives = 67/109 (61%)
 Frame = -2

Query: 328  TDSAPPTSSRDDDYESPPRKVRSIRELYNSTEQIELDDVVYFAFFAGEDPISFDDASREE 149
            +DS+P +  +    ES PR+VRS+ EL  ST Q    +   F  ++  +P SF +A + +
Sbjct: 797  SDSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHD 856

Query: 148  TWKQAMIEEIKSIEKNGTWELTDLPPHKIPIGVKWVYKIKKNPDGSINK 2
             W +AM +EI  IEKN TWEL D P  +  IGVKWVYK K NPDGS+ K
Sbjct: 857  NWIKAMEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQK 905


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 54/119 (45%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
 Frame = -2

Query: 346  EEVGSHTDSAPPTSSRDDDYESPPR----KVRSIRELYNSTEQIELDDVVYFAFFAGEDP 179
            EE  S   + PPTS      E        + RSI+ELY  TE  E  ++  F  FA  +P
Sbjct: 781  EEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQE--NLTLFCLFAECEP 838

Query: 178  ISFDDASREETWKQAMIEEIKSIEKNGTWELTDLPPHKIPIGVKWVYKIKKNPDGSINK 2
            + F +A  ++TW+ AM EEIKSI+KN TWELT LP     IGVKWVYK KKN  G + +
Sbjct: 839  MDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVER 897