BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035286
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp....    70   2e-10
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    69   4e-10
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    69   5e-10
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    69   5e-10
ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 ...    68   7e-10

>ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297339749|gb|EFH70166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 110

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 36/103 (34%), Positives = 57/103 (55%)
 Frame = +1

Query: 31  LGDYRSYMVPSMGLSGGMWLLWESFVKVEVLGAESWFIHCNVNLSMNGKEESFVLSCVYG 210
           +G   +++V   GLSGG+ L W+    VE+L ++S  I   V L        F +SCVYG
Sbjct: 1   MGYKNAHIVDPEGLSGGLALFWKDSYNVEILFSDSRIIDAKVKLG----SLIFYISCVYG 56

Query: 211 NPKLAIRKMQWAVLPLLKPQNDEKWIVMGDFNEVTTQTEKRGG 339
           +P   +R++ W  L  +    ++ W+V+GD NE+   +EK GG
Sbjct: 57  DPVAHLRQIVWDKLIDISVLRNDPWLVLGDLNEIMNNSEKLGG 99


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 36/103 (34%), Positives = 54/103 (52%)
 Frame = +1

Query: 31  LGDYRSYMVPSMGLSGGMWLLWESFVKVEVLGAESWFIHCNVNLSMNGKEESFVLSCVYG 210
           LG  R Y +  +G  GG+ + W+  VK+++  A+   I   V         +F LSCVYG
Sbjct: 17  LGYDRVYSIEPVGRCGGLAIFWKESVKIDIKFADKNLIDLQVQFGA----VNFFLSCVYG 72

Query: 211 NPKLAIRKMQWAVLPLLKPQNDEKWIVMGDFNEVTTQTEKRGG 339
           +P    RK+ W  L ++     E+W ++GDFNE+    EK GG
Sbjct: 73  DPDFKKRKIVWERLSIIGVGRRERWCMVGDFNEILHNEEKIGG 115


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/112 (31%), Positives = 58/112 (51%)
 Frame = +1

Query: 4   NKAASMIRRLGDYRSYMVPSMGLSGGMWLLWESFVKVEVLGAESWFIHCNVNLSMNGKEE 183
           +K   +   LG       P  G SGG+ L+W++ V + ++  +   I  +V  +     +
Sbjct: 197 DKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFN----NK 252

Query: 184 SFVLSCVYGNPKLAIRKMQWAVLPLLKPQNDEKWIVMGDFNEVTTQTEKRGG 339
           SF LSCVYG+P  + R   W  L  +    + +W+++GDFNE+ +  EK GG
Sbjct: 253 SFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGG 304


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/112 (31%), Positives = 58/112 (51%)
 Frame = +1

Query: 4   NKAASMIRRLGDYRSYMVPSMGLSGGMWLLWESFVKVEVLGAESWFIHCNVNLSMNGKEE 183
           +K   +   LG       P  G SGG+ L+W++ V + ++  +   I  +V  +     +
Sbjct: 423 DKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFN----NK 478

Query: 184 SFVLSCVYGNPKLAIRKMQWAVLPLLKPQNDEKWIVMGDFNEVTTQTEKRGG 339
           SF LSCVYG+P  + R   W  L  +    + +W+++GDFNE+ +  EK GG
Sbjct: 479 SFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGG 530


>ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 [Sorghum bicolor]
           gi|241947006|gb|EES20151.1| hypothetical protein
           SORBIDRAFT_0011s003210 [Sorghum bicolor]
          Length = 821

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = +1

Query: 7   KAASMIRRLGDYRSYMVPSMGLSGGMWLLWESFVKVEVLGAESWFIHCNVNLSMNG-KEE 183
           KA  + RRLG   + +V S GLSGG+ L+W   V V  L       H +V LS +  K  
Sbjct: 118 KALGLARRLGFQNAIVVKSEGLSGGLMLMWHGNVMVAELTKSR--SHIDVILSCDHLKIS 175

Query: 184 SFVLSCVYGNPKLAIRKMQWAVLPLLKPQNDEKWIVMGDFNEVTTQTEKRG 336
            + L+  YG P+   R+  W +L  L+ Q+ + W+ +GDFNEV    E+ G
Sbjct: 176 HWRLTGFYGEPRWERRRESWYLLRFLRAQSSDPWLCLGDFNEVLAMEEQMG 226