BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035254
         (788 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABM97612.1| reverse transcriptase [Dahlia mosaic virus]            334   1e-89
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]                  332   4e-89
gb|AEA39176.1| polyprotein [Dahlia mosaic virus]                      330   2e-88
gb|ABW80581.1| polyprotein [Dahlia mosaic virus]                      330   2e-88
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote...   328   8e-88

>gb|ABM97612.1| reverse transcriptase [Dahlia mosaic virus]
          Length = 322

 Score =  334 bits (857), Expect = 1e-89
 Identities = 166/260 (63%), Positives = 202/260 (77%)
 Frame = -3

Query: 786 EELWENAPNPINVKIANDETVVINKVCRNLDIRIAGKIFLIPTIYQQWTGTDILLGNNFC 607
           EELWENAP  I V IAN ET+ ++KVCRNL +  +G+ F IPTIYQQ +G D+LLGNNFC
Sbjct: 20  EELWENAPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQESGIDLLLGNNFC 79

Query: 606 QVYSPFTQWVDRIEFHLNDEPVLIKKLTKAYRFGDEYFLSKLKKDNKGKPPLPGKNIAPE 427
           Q+Y PFTQW+DRI FHLN E +LIKK+TKA++ G + FL  +KKD+K K  +PG NI  E
Sbjct: 80  QLYGPFTQWIDRISFHLNQEMILIKKVTKAFQIGKDGFLESMKKDSKTKQ-IPGTNITQE 138

Query: 426 IVTYLQNTFVISIQQFKRIEDLLDKVCSENPIDPEKSKQWMKASIKLIDETTVVKVRPMQ 247
           ++      F + IQ++++IE LL+KVCSENPIDPEKSK WM ASI+LID  TV++V+PM+
Sbjct: 139 VIK--PERFFLEIQKYQKIEKLLEKVCSENPIDPEKSKYWMTASIELIDPKTVIRVKPMK 196

Query: 246 YSPQDREEFTKQIKELLDLKXXXXXXXXXXXPAFLVENEAERRRGKKRMVINYKKINSHT 67
           YSPQDREEF+KQIKELLDLK           PAFL ENEAE+RRGKKRMV+NYK IN  T
Sbjct: 197 YSPQDREEFSKQIKELLDLKLIIPSKSPHMSPAFLAENEAEKRRGKKRMVVNYKAINEAT 256

Query: 66  IGDSHNLPNMRELMTLLRGK 7
            GDSHNLP M+EL+TLLRGK
Sbjct: 257 KGDSHNLPCMQELLTLLRGK 276


>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
          Length = 810

 Score =  332 bits (852), Expect = 4e-89
 Identities = 164/262 (62%), Positives = 202/262 (77%)
 Frame = -3

Query: 786 EELWENAPNPINVKIANDETVVINKVCRNLDIRIAGKIFLIPTIYQQWTGTDILLGNNFC 607
           E+LWEN P  I V IAN ET+ ++KVCRNL +  +G+ F IP IYQQ TG D+LLGNNFC
Sbjct: 215 EDLWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPIIYQQETGIDLLLGNNFC 274

Query: 606 QVYSPFTQWVDRIEFHLNDEPVLIKKLTKAYRFGDEYFLSKLKKDNKGKPPLPGKNIAPE 427
           Q+Y PFTQW+DRI FHLN+E +LIKK+TKA++ G   FL  +KKD+K K  +PG NI  E
Sbjct: 275 QLYGPFTQWIDRISFHLNEEMILIKKITKAFQIGKTGFLESMKKDSKAKQ-IPGTNITQE 333

Query: 426 IVTYLQNTFVISIQQFKRIEDLLDKVCSENPIDPEKSKQWMKASIKLIDETTVVKVRPMQ 247
           ++      F + IQ++++IE+LL+KVCSENPIDPEKS  WM ASI+LID  TV++ +PM+
Sbjct: 334 VIK--PERFFLEIQKYQKIEELLEKVCSENPIDPEKSNYWMNASIELIDPKTVIREKPMK 391

Query: 246 YSPQDREEFTKQIKELLDLKXXXXXXXXXXXPAFLVENEAERRRGKKRMVINYKKINSHT 67
           YSPQDREEF+KQIKELLDLK           PAFLVENEAE+RRGKKRMV+NYK IN+ T
Sbjct: 392 YSPQDREEFSKQIKELLDLKIIIPSKSPHMSPAFLVENEAEKRRGKKRMVVNYKAINAAT 451

Query: 66  IGDSHNLPNMRELMTLLRGKNY 1
            GDSHNLP M+EL+TLLRGK Y
Sbjct: 452 KGDSHNLPCMQELLTLLRGKIY 473


>gb|AEA39176.1| polyprotein [Dahlia mosaic virus]
          Length = 808

 Score =  330 bits (847), Expect = 2e-88
 Identities = 166/260 (63%), Positives = 200/260 (76%)
 Frame = -3

Query: 786 EELWENAPNPINVKIANDETVVINKVCRNLDIRIAGKIFLIPTIYQQWTGTDILLGNNFC 607
           EELWEN P  I V IAN ET+ ++KVCRNL +  +G+ F IPTIYQQ +G D+LLGNNFC
Sbjct: 213 EELWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQESGIDLLLGNNFC 272

Query: 606 QVYSPFTQWVDRIEFHLNDEPVLIKKLTKAYRFGDEYFLSKLKKDNKGKPPLPGKNIAPE 427
           Q+Y PFTQW+DRI FHLN E +LIKK+TKA++ G   FL  +KKD+K K   PG NI  E
Sbjct: 273 QLYGPFTQWIDRISFHLNQEMILIKKITKAFQIGKTGFLESMKKDSKTKQT-PGTNITQE 331

Query: 426 IVTYLQNTFVISIQQFKRIEDLLDKVCSENPIDPEKSKQWMKASIKLIDETTVVKVRPMQ 247
           ++      F + IQ++++IE+LL+KVCSENPIDPEKSK WM ASI+LID  TVV+V+PM+
Sbjct: 332 VIK--PERFFLEIQKYQKIEELLEKVCSENPIDPEKSKYWMNASIELIDPKTVVRVKPMK 389

Query: 246 YSPQDREEFTKQIKELLDLKXXXXXXXXXXXPAFLVENEAERRRGKKRMVINYKKINSHT 67
           YSPQDREEF KQIKELLDLK           PAFLV NEAERRRGKKRMV+NYK IN+ T
Sbjct: 390 YSPQDREEFGKQIKELLDLKLIIPSKSPHMSPAFLVGNEAERRRGKKRMVVNYKAINAAT 449

Query: 66  IGDSHNLPNMRELMTLLRGK 7
            GDSHNLP ++EL+TLLRGK
Sbjct: 450 KGDSHNLPCIQELLTLLRGK 469


>gb|ABW80581.1| polyprotein [Dahlia mosaic virus]
          Length = 812

 Score =  330 bits (847), Expect = 2e-88
 Identities = 165/260 (63%), Positives = 200/260 (76%)
 Frame = -3

Query: 786 EELWENAPNPINVKIANDETVVINKVCRNLDIRIAGKIFLIPTIYQQWTGTDILLGNNFC 607
           E+LWEN P  I V IAN ET+ ++KVCRNL +  +G+ F IPTIYQQ +G D+LLGNNFC
Sbjct: 217 EDLWENTPKDIKVTIANQETIKLDKVCRNLIVYFSGEPFPIPTIYQQESGIDLLLGNNFC 276

Query: 606 QVYSPFTQWVDRIEFHLNDEPVLIKKLTKAYRFGDEYFLSKLKKDNKGKPPLPGKNIAPE 427
           Q+Y PFTQW+DRI FHLN E +LIKK+TKA++ G   FL  +KKD+K K  +PG NI  E
Sbjct: 277 QLYGPFTQWIDRISFHLNQEMILIKKITKAFQIGKTGFLESMKKDSKTKQ-IPGTNITQE 335

Query: 426 IVTYLQNTFVISIQQFKRIEDLLDKVCSENPIDPEKSKQWMKASIKLIDETTVVKVRPMQ 247
           ++      F + IQ++++IEDLL+KVC ENPIDPEKSK WM ASI+LID  TVV+V+PM+
Sbjct: 336 VIK--PERFFLEIQRYQKIEDLLEKVCFENPIDPEKSKYWMNASIELIDPKTVVRVKPMK 393

Query: 246 YSPQDREEFTKQIKELLDLKXXXXXXXXXXXPAFLVENEAERRRGKKRMVINYKKINSHT 67
           YSPQDREEF KQIKELLDLK           PAFLVENEAE+RRGKKR V+NYK IN+ T
Sbjct: 394 YSPQDREEFGKQIKELLDLKLIIPSKSPHMSPAFLVENEAEKRRGKKRRVVNYKAINAAT 453

Query: 66  IGDSHNLPNMRELMTLLRGK 7
            GDSHNLP M+EL+TLLRGK
Sbjct: 454 KGDSHNLPCMQELLTLLRGK 473


>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
           Reverse transcriptase] [Figwort mosaic virus]
           gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
           polyprotein; Includes: RecName: Full=Aspartic protease;
           Includes: RecName: Full=Endonuclease; Includes: RecName:
           Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
           unnamed protein product [Figwort mosaic virus]
          Length = 666

 Score =  328 bits (841), Expect = 8e-88
 Identities = 165/261 (63%), Positives = 200/261 (76%)
 Frame = -3

Query: 786 EELWENAPNPINVKIANDETVVINKVCRNLDIRIAGKIFLIPTIYQQWTGTDILLGNNFC 607
           EELWEN+P  I VKIAN E + I KVC+NL ++ AGK F IPT+YQQ TG D L+GNNFC
Sbjct: 69  EELWENSPKDIQVKIANQELIKITKVCKNLKVKFAGKSFEIPTVYQQETGIDFLIGNNFC 128

Query: 606 QVYSPFTQWVDRIEFHLNDEPVLIKKLTKAYRFGDEYFLSKLKKDNKGKPPLPGKNIAPE 427
           ++Y+PF QW DRI FHL +E VLIKK+TKA+   +  FL  +KKD+K +  +PG NI+  
Sbjct: 129 RLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVSNPSFLENMKKDSKTEQ-IPGTNISKN 187

Query: 426 IVTYLQNTFVISIQQFKRIEDLLDKVCSENPIDPEKSKQWMKASIKLIDETTVVKVRPMQ 247
           I+   +  F+I+ +++++IE LLDKVCSENPIDP KSKQWMKASIKLID   V++V+PM 
Sbjct: 188 IINPEERYFLIT-EKYQKIEQLLDKVCSENPIDPIKSKQWMKASIKLIDPLKVIRVKPMS 246

Query: 246 YSPQDREEFTKQIKELLDLKXXXXXXXXXXXPAFLVENEAERRRGKKRMVINYKKINSHT 67
           YSPQDRE F KQIKELLDL            PAFLVENEAERRRGKKRMV+NYK IN  T
Sbjct: 247 YSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQAT 306

Query: 66  IGDSHNLPNMRELMTLLRGKN 4
           IGDSHNLPNM+EL+TLLRGK+
Sbjct: 307 IGDSHNLPNMQELLTLLRGKS 327