BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035241
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containi...   172   2e-41
ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|2...   172   2e-41
ref|XP_002530010.1| pentatricopeptide repeat-containing protein,...   164   7e-39
ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36
ref|XP_003618546.1| Pentatricopeptide repeat-containing protein ...   155   3e-36

>ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  172 bits (437), Expect = 2e-41
 Identities = 79/126 (62%), Positives = 108/126 (85%)
 Frame = +3

Query: 3   RRVFDEMSEKSVVSWSVMLNGVIKFEGVQKGRCWFDEMPERNEVSWTLMIAGYIENGFSR 182
           RRVF EM  +SVVSW+V+L+GVI+ EGV+ GR  FDEMPERNEV+WT+MIAGY+++G ++
Sbjct: 173 RRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQ 232

Query: 183 EAFSLVSDMMSGMCFELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTA 362
           E+F+LV +M+  +  ELN+VTLCS L ACS SG+L+MG+WVH YA+KT EK++++MVGTA
Sbjct: 233 ESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTA 292

Query: 363 LVDMYS 380
           +VDMY+
Sbjct: 293 MVDMYA 298


>ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|222867076|gb|EEF04207.1|
           predicted protein [Populus trichocarpa]
          Length = 636

 Score =  172 bits (437), Expect = 2e-41
 Identities = 81/126 (64%), Positives = 102/126 (80%)
 Frame = +3

Query: 3   RRVFDEMSEKSVVSWSVMLNGVIKFEGVQKGRCWFDEMPERNEVSWTLMIAGYIENGFSR 182
           RRVF EM+E++VVSWS +L GV+K+EGV+ GR  FDEMPERNEV WT+MIAGY+ NGFSR
Sbjct: 177 RRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSR 236

Query: 183 EAFSLVSDMMSGMCFELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTA 362
           E F L+ +M+      LN VTL S L AC+ SG++LMG+WVHVYA+K M ++MH+MVGTA
Sbjct: 237 EGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTA 296

Query: 363 LVDMYS 380
           LVDMY+
Sbjct: 297 LVDMYA 302


>ref|XP_002530010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530489|gb|EEF32372.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 487

 Score =  164 bits (415), Expect = 7e-39
 Identities = 70/124 (56%), Positives = 101/124 (81%)
 Frame = +3

Query: 9   VFDEMSEKSVVSWSVMLNGVIKFEGVQKGRCWFDEMPERNEVSWTLMIAGYIENGFSREA 188
           VF EM E+ +VSW+ +L GV+ +EGV+ G+  FD+MPERNEV WT+MI+GY+ +GF +E 
Sbjct: 187 VFSEMGERDIVSWTALLEGVVNWEGVENGKVVFDQMPERNEVGWTIMISGYVGSGFCKEG 246

Query: 189 FSLVSDMMSGMCFELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTALV 368
           F L+S+M+ G+  ELN+VTLCS L AC+ SG+++MG+WVHVYA+K M +++ +MVGTAL+
Sbjct: 247 FLLLSEMVLGLRLELNYVTLCSILSACAQSGDVVMGRWVHVYALKKMGREIDMMVGTALI 306

Query: 369 DMYS 380
           DMY+
Sbjct: 307 DMYA 310


>ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  155 bits (393), Expect = 2e-36
 Identities = 73/128 (57%), Positives = 101/128 (78%), Gaps = 2/128 (1%)
 Frame = +3

Query: 3   RRVFDEMSEKSVVSWSVMLNGVIKFEGVQKGRCWFDEMPERNEVSWTLMIAGYIENGFSR 182
           RRVF+E+ E SVVSW+V+L GV+K EGV+ G+  FDEMPERNEV+WT++I GY+ +GF++
Sbjct: 168 RRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTK 227

Query: 183 EAFSLVSDMM--SGMCFELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVG 356
           EAF L+ +M+   G  F LN +TLCS L ACS SG++ +G+WVH YA+K +  D+ +MVG
Sbjct: 228 EAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVG 287

Query: 357 TALVDMYS 380
           T+LVDMY+
Sbjct: 288 TSLVDMYA 295


>ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355493561|gb|AES74764.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  155 bits (392), Expect = 3e-36
 Identities = 71/126 (56%), Positives = 97/126 (76%)
 Frame = +3

Query: 3   RRVFDEMSEKSVVSWSVMLNGVIKFEGVQKGRCWFDEMPERNEVSWTLMIAGYIENGFSR 182
           R++F+ +  +SVVSWS  L G++K+E V+ GR  FDEMPERNEV+WT+MI GY+ NGF++
Sbjct: 178 RKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTK 237

Query: 183 EAFSLVSDMMSGMCFELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTA 362
           EAF L+ +M+ G  F L+ VTLCS L ACS SG++ +G+WVH YA+K M  D  +MVGT+
Sbjct: 238 EAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTS 297

Query: 363 LVDMYS 380
           LVDMY+
Sbjct: 298 LVDMYA 303