BLASTX nr result

ID: Coptis23_contig00035226 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035226
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15201.3| unnamed protein product [Vitis vinifera]               59   4e-07
ref|XP_002284788.1| PREDICTED: galactoside 2-alpha-L-fucosyltran...    59   4e-07
emb|CAN66665.1| hypothetical protein VITISV_031725 [Vitis vinifera]    59   5e-07

>emb|CBI15201.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
 Frame = -2

Query: 280 MDMKRIRNSSKQQQTDPENESVSRLVERKTGLNTMKTMGILVACLMILPVFVTISVIYRG 101
           M ++R  +  + + +DPE+ +VSR ++R+   N M+ MGILV CLM++ V  ++SV+ R 
Sbjct: 1   MRLRRNTDDEQLRLSDPEHHTVSRPLDRECEQNPMRLMGILVVCLMVVSVLFSVSVVLRD 60

Query: 100 SSLD--------QYKGFTDAKGSEDATSKPVGEHKDKLLDG 2
              D        ++      K +ED  S    E KDKLL G
Sbjct: 61  PPSDGVWASEETKFLQVNPRKDAEDNLSWSAEEPKDKLLGG 101


>ref|XP_002284788.1| PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like [Vitis
           vinifera]
          Length = 573

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
 Frame = -2

Query: 280 MDMKRIRNSSKQQQTDPENESVSRLVERKTGLNTMKTMGILVACLMILPVFVTISVIYRG 101
           M ++R  +  + + +DPE+ +VSR ++R+   N M+ MGILV CLM++ V  ++SV+ R 
Sbjct: 1   MRLRRNTDDEQLRLSDPEHHTVSRPLDRECEQNPMRLMGILVVCLMVVSVLFSVSVVLRD 60

Query: 100 SSLD--------QYKGFTDAKGSEDATSKPVGEHKDKLLDG 2
              D        ++      K +ED  S    E KDKLL G
Sbjct: 61  PPSDGVWASEETKFLQVNPRKDAEDNLSWSAEEPKDKLLGG 101


>emb|CAN66665.1| hypothetical protein VITISV_031725 [Vitis vinifera]
          Length = 661

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
 Frame = -2

Query: 298 PNEELKMDMKRIRNSSKQQQ--TDPENESVSRLVERKTGLNTMKTMGILVACLMILPVFV 125
           P+ +    M+  RN+  +Q   +DPE+ +VSR ++R    N M+ MGILV CLM++ V  
Sbjct: 83  PBVDSTHVMRLRRNTDDEQLRLSDPEHHTVSRPLDRXCEQNXMRLMGILVVCLMVVSVLF 142

Query: 124 TISVIYRGSSLD--------QYKGFTDAKGSEDATSKPVGEHKDKLLDG 2
           ++SV+ R    D        ++      K +ED  S    E KDKLL G
Sbjct: 143 SVSVVLRDPPSDGVWASEETKFLQVNPRKDAEDNLSWSAEEPKDKLLGG 191


Top