BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035217
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    65   4e-09
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    65   6e-09
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                57   2e-06
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    56   4e-06
emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulga...    55   5e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 41/104 (39%), Positives = 56/104 (53%)
 Frame = +2

Query: 5   FLLAVLKQFGFVDIWCQWVMSIISSAHISVLVNGEPCG*LVTLN*GAGPGKVTQCYQCFV 184
           FLLAVL++FGF + +  W++ I+ SA +SVLVNG+  G   T + G   G          
Sbjct: 600 FLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVG-FFTCSHGVRQGDPLS--PLLF 656

Query: 185 ALAEEVLNRGLTFLRTSDMINRMCSFNGTPGHFHLLFADDVYIF 316
            L EEVL+R L+   T   +  M    G     H+L+ADDV IF
Sbjct: 657 CLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIF 700


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/107 (35%), Positives = 56/107 (52%)
 Frame = +2

Query: 2   EFLLAVLKQFGFVDIWCQWVMSIISSAHISVLVNGEPCG*LVTLN*GAGPGKVTQCYQCF 181
           +FLL VLKQFGF + +C W+ +I+ SA +S+ +NG   G     +   G  +        
Sbjct: 273 KFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQG---YFSCSRGVRQGDPLSPLL 329

Query: 182 VALAEEVLNRGLTFLRTSDMINRMCSFNGTPGHFHLLFADDVYIFAN 322
             LAE+VL+R LT L     + +M          H+L+ADD+ IF N
Sbjct: 330 FCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMIFCN 376


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/105 (33%), Positives = 50/105 (47%)
 Frame = +2

Query: 2   EFLLAVLKQFGFVDIWCQWVMSIISSAHISVLVNGEPCG*LVTLN*GAGPGKVTQCYQCF 181
           +FL   ++ FGF D W  W+M+ + S H SVL+NG P G  ++   G   G     Y   
Sbjct: 208 DFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHG-YISPTRGIRQGDPLSPY--L 264

Query: 182 VALAEEVLNRGLTFLRTSDMINRMCSFNGTPGHFHLLFADDVYIF 316
             L  ++L+  +    +S  I  +   NG P   HL FADD   F
Sbjct: 265 FILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFF 309


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/105 (28%), Positives = 53/105 (50%)
 Frame = +2

Query: 2   EFLLAVLKQFGFVDIWCQWVMSIISSAHISVLVNGEPCG*LVTLN*GAGPGKVTQCYQCF 181
           +FLL VLK FGF +++C W+ +I+ S+ + + +NG   G     N   G  +        
Sbjct: 334 DFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHG---FFNCNRGVRQGDPLSPLL 390

Query: 182 VALAEEVLNRGLTFLRTSDMINRMCSFNGTPGHFHLLFADDVYIF 316
             + EEVL+R ++ L    +I+ + +       FH  + DD+ +F
Sbjct: 391 FCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVF 435


>emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 37/106 (34%), Positives = 55/106 (51%)
 Frame = +2

Query: 5   FLLAVLKQFGFVDIWCQWVMSIISSAHISVLVNGEPCG*LVTLN*GAGPGKVTQCYQCFV 184
           FL  VLK+  F D WC+W+M+ +S+A +S+LVNG PC     L  G   G     +  FV
Sbjct: 585 FLEWVLKEMNFPDQWCKWIMNCVSTAAVSILVNGSPCA-PFKLQRGLRQGDPLSSF-LFV 642

Query: 185 ALAEEVLNRGLTFLRTSDMINRMCSFNGTPGHFHLLFADDVYIFAN 322
            +AE  LN+ +    + ++   +    G     HL +ADD  IF +
Sbjct: 643 LIAES-LNQIIMKATSQNLWKGVEVGQGEIIVTHLQYADDTLIFCD 687