BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035192
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...   108   8e-22
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    96   1e-21
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   107   2e-21
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   107   2e-21
gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indi...    79   4e-21

>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score =  108 bits (269), Expect = 8e-22
 Identities = 43/102 (42%), Positives = 72/102 (70%)
 Frame = -3

Query: 571 LPERYLGVPLMQGRVTRVAVAPLLEKIRKRISSWKGKLLSFQGRVVLIRSVLSSFTVYIM 392
           LP  YLGVP+ +G+   + + P+++KI  ++S+WK  LLS  GRV +++SV+ S   + +
Sbjct: 33  LPFTYLGVPIFKGKPKVIHLQPIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQSMLTHSI 92

Query: 391 AIYKWPVSVIKEAERILRNFLWSGDADTKKGVTVSWEKCCKP 266
            +Y WP S++K+ E+ ++NF+WSGD   +K VTV+W+K C+P
Sbjct: 93  TVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRP 134


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 96.3 bits (238), Expect(2) = 1e-21
 Identities = 47/102 (46%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = -3

Query: 571  LPERYLGVPLMQGRVTRVAVAPLLEKIRKRISSWKGKLLSFQGRVVLIRSVLSSFTVYIM 392
            LP +YLG+PL+  R+T+    PL+EKIR RI+SW  + LSF GR+ LI+SVLSS T + +
Sbjct: 914  LPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWL 973

Query: 391  AIYKWPVSVIKEAERILRNFLWSG-DADTKKGVTVSWEKCCK 269
            ++++ P + ++E E++   FLWSG D +TKK   ++W + CK
Sbjct: 974  SVFRLPKACLQEIEKMFSAFLWSGPDLNTKK-AKIAWSEVCK 1014



 Score = 32.0 bits (71), Expect(2) = 1e-21
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 261  QGSLGLRRLKEVNLALLMKLGWNVLNGGD 175
            +G LGL+ LKE N   L+KL W +L+  D
Sbjct: 1018 EGGLGLKPLKEANEVSLLKLIWRILSARD 1046


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  107 bits (266), Expect = 2e-21
 Identities = 46/104 (44%), Positives = 70/104 (67%)
 Frame = -3

Query: 568 PERYLGVPLMQGRVTRVAVAPLLEKIRKRISSWKGKLLSFQGRVVLIRSVLSSFTVYIMA 389
           P  YLGVP+ +G+     + P+++KI+ ++S+WK  +LS  GRV LI+SV  S  ++ + 
Sbjct: 399 PFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTIT 458

Query: 388 IYKWPVSVIKEAERILRNFLWSGDADTKKGVTVSWEKCCKPNTR 257
           IY WP  ++KE E   RNF+WSGD   +K VTV+W+K CKP ++
Sbjct: 459 IYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQ 502


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  107 bits (266), Expect = 2e-21
 Identities = 42/100 (42%), Positives = 68/100 (68%)
 Frame = -3

Query: 571 LPERYLGVPLMQGRVTRVAVAPLLEKIRKRISSWKGKLLSFQGRVVLIRSVLSSFTVYIM 392
           LP  YLG P+ +G+   +   P+ +K++ +++ WK  LLS  GR+ L++SV+ S  V+ M
Sbjct: 492 LPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTM 551

Query: 391 AIYKWPVSVIKEAERILRNFLWSGDADTKKGVTVSWEKCC 272
           +IY WP+ ++KE E+ ++NF+WSGD   +K VTV+W K C
Sbjct: 552 SIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKIC 591


>gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indica Group]
          Length = 556

 Score = 79.0 bits (193), Expect(3) = 4e-21
 Identities = 36/95 (37%), Positives = 60/95 (63%)
 Frame = -3

Query: 565 ERYLGVPLMQGRVTRVAVAPLLEKIRKRISSWKGKLLSFQGRVVLIRSVLSSFTVYIMAI 386
           ++YLG P+ +GR+T+     L E++ KRI  W  KLLS  G+ +LI++VL +  VY+M +
Sbjct: 155 DKYLGFPMPEGRMTKGKFQSLQERLWKRIMLWGEKLLSTGGKEILIKAVLQAMPVYVMGL 214

Query: 385 YKWPVSVIKEAERILRNFLWSGDADTKKGVTVSWE 281
           +K P SV +E  +++RNF W  +   ++    SW+
Sbjct: 215 FKLPESVYEELTKLVRNFWWGAEKGKRRTHWKSWD 249



 Score = 37.0 bits (84), Expect(3) = 4e-21
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 98  WKGIENALKEINPNSSWIIGNGGQIDLWRDEW 3
           W+ IE  L+ +     W IGNG  + LWRD W
Sbjct: 315 WRAIEYGLELLKKGIIWRIGNGKSVRLWRDPW 346



 Score = 30.8 bits (68), Expect(3) = 4e-21
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 276 VASLIQGSLGLRRLKEVNLALLMKLGWNVLNGGDEF-ALFMKRKFFSKG 133
           +A  ++G +G R  +  N ALL +  W +L+  D   A  +K K++  G
Sbjct: 252 IARKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAKYYPNG 300