BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035172
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    78   8e-13
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    77   2e-12
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    76   2e-12
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    75   5e-12
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 72   5e-11

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 35/93 (37%), Positives = 55/93 (59%)
 Frame = +3

Query: 33  MTTCRRESIESFLGIKEGGLPEQYLGVPMITGRVTKAALVPLVDKIRLKASSWAGRMLSF 212
           ++  R + + + +G  +G  P  YLGVP+  G+     L P+VDKI+ K S+W   +LS 
Sbjct: 379 ISDARLQQLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSI 438

Query: 213 QGRVVLARHVLNSIPVHNLAIYKWPSLVIQECE 311
            GRV L + V  S+ +H + IY WPS +++E E
Sbjct: 439 AGRVQLIKSVAQSMLIHTITIYDWPSFLLKELE 471


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/103 (36%), Positives = 65/103 (63%)
 Frame = +3

Query: 6    DKCKVFLIPMTTCRRESIESFLGIKEGGLPEQYLGVPMITGRVTKAALVPLVDKIRLKAS 185
            +K  +F+  ++   + SI      + G LP +YLG+P++T R+T++  +PLV+KIR + +
Sbjct: 886  EKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARIT 945

Query: 186  SWAGRMLSFQGRVVLARHVLNSIPVHNLAIYKWPSLVIQECER 314
            SW  R LSF GR+ L + VL+SI    L++++ P   +QE E+
Sbjct: 946  SWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEK 988


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 35/102 (34%), Positives = 56/102 (54%)
 Frame = +3

Query: 9   KCKVFLIPMTTCRRESIESFLGIKEGGLPEQYLGVPMITGRVTKAALVPLVDKIRLKASS 188
           K  +F   +T  R  +I + LG   G LP  YLG P+  G+       P+ DK++ K + 
Sbjct: 465 KSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAK 524

Query: 189 WAGRMLSFQGRVVLARHVLNSIPVHNLAIYKWPSLVIQECER 314
           W   +LS  GR+ L + V+ S+ VH ++IY WP  +++E E+
Sbjct: 525 WKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEK 566


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 34/103 (33%), Positives = 59/103 (57%)
 Frame = +3

Query: 6   DKCKVFLIPMTTCRRESIESFLGIKEGGLPEQYLGVPMITGRVTKAALVPLVDKIRLKAS 185
           +K  VF   ++  +   + + +G   G LP  YLGVP+  G+     L P+VDKI  K S
Sbjct: 5   NKSTVFAGSISVSKLNQLINIIGFNHGTLPFTYLGVPIFKGKPKVIHLQPIVDKIIAKLS 64

Query: 186 SWAGRMLSFQGRVVLARHVLNSIPVHNLAIYKWPSLVIQECER 314
           +W   +LS  GRV + + V+ S+  H++ +Y WP+ ++++ E+
Sbjct: 65  TWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEK 107


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 37/103 (35%), Positives = 61/103 (59%)
 Frame = +3

Query: 6   DKCKVFLIPMTTCRRESIESFLGIKEGGLPEQYLGVPMITGRVTKAALVPLVDKIRLKAS 185
           +K  ++L  ++   R +I S      G LP +YLG+P++T ++T A   PL+DK+R K S
Sbjct: 312 EKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKIS 371

Query: 186 SWAGRMLSFQGRVVLARHVLNSIPVHNLAIYKWPSLVIQECER 314
           SW  R LS+ GR+ L   V+ S+    ++ Y+ P+  I+E E+
Sbjct: 372 SWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEK 414