BLASTX nr result
ID: Coptis23_contig00035110
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00035110
(281 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002536106.1| pentatricopeptide repeat-containing protein,... 137 9e-31
ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containi... 134 6e-30
ref|XP_002310592.1| predicted protein [Populus trichocarpa] gi|2... 133 1e-29
ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containi... 131 6e-29
emb|CBI21484.3| unnamed protein product [Vitis vinifera] 130 1e-28
>ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223520840|gb|EEF26277.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 519
Score = 137 bits (345), Expect = 9e-31
Identities = 67/93 (72%), Positives = 83/93 (89%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRVSWNRD 101
LSVSS++AS++HGKQIH AIRSGE SVSVGNAL+TMYAK GSI ++++VF+ + N+D
Sbjct: 345 LSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKD 404
Query: 100 TVSWTSMIISLAQHGLGEEAIELFEKMLAIGIK 2
TVSWTSMII+L QHGLG+E+IELFEKMLA+GIK
Sbjct: 405 TVSWTSMIIALGQHGLGQESIELFEKMLALGIK 437
Score = 70.1 bits (170), Expect = 2e-10
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 30/119 (25%)
Frame = -2
Query: 268 SSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRV------SWN 107
++L ++D GK+IH I+ G V V N+L+ MYAK G ++ VFDR+ SWN
Sbjct: 83 AALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIVFDRMRLRSISSWN 142
Query: 106 ------------------------RDTVSWTSMIISLAQHGLGEEAIELFEKMLAIGIK 2
RD V+W SMI +QHG +EA+ELF +ML +K
Sbjct: 143 IMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEALELFSRMLEDSLK 201
>ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 134 bits (338), Expect = 6e-30
Identities = 66/93 (70%), Positives = 78/93 (83%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRVSWNRD 101
LSVSSSLAS+DHG+QIH A RSG SSVSV NAL+TMYAK GSI ++R VF+ + W RD
Sbjct: 419 LSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRD 478
Query: 100 TVSWTSMIISLAQHGLGEEAIELFEKMLAIGIK 2
T++WTSMII+LAQHGLGEEA+ LFE+ML GIK
Sbjct: 479 TITWTSMIIALAQHGLGEEALTLFERMLENGIK 511
Score = 63.5 bits (153), Expect = 2e-08
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 30/118 (25%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRV----- 116
L+ +++ + G+++H ++ G S +SV N+L+ MYAK G ++ VFDR+
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211
Query: 115 -SWN------------------------RDTVSWTSMIISLAQHGLGEEAIELFEKML 17
SWN RD VSW +MI QHG EA+++F KML
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKML 269
>ref|XP_002310592.1| predicted protein [Populus trichocarpa] gi|222853495|gb|EEE91042.1|
predicted protein [Populus trichocarpa]
Length = 747
Score = 133 bits (335), Expect = 1e-29
Identities = 67/93 (72%), Positives = 78/93 (83%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRVSWNRD 101
LS SSS+ S++HGKQIH AIRSGE S SVGNAL TMYAK GSI +R+VF+ + NRD
Sbjct: 381 LSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRD 440
Query: 100 TVSWTSMIISLAQHGLGEEAIELFEKMLAIGIK 2
TVSWTSMI++LAQHGLGEEAIELFE+ML +GIK
Sbjct: 441 TVSWTSMIMALAQHGLGEEAIELFEQMLTLGIK 473
Score = 68.6 bits (166), Expect = 5e-10
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 32/123 (26%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFD------- 122
LS ++L + GKQIHG +R+ ++S +VGNAL++MYAK G ++ +RR+ +
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDL 306
Query: 121 ---------------------RVSWNR----DTVSWTSMIISLAQHGLGEEAIELFEKML 17
R +N D V+WT+MI+ Q+GL +AIE+F+ M+
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366
Query: 16 AIG 8
+ G
Sbjct: 367 SEG 369
Score = 60.1 bits (144), Expect = 2e-07
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 30/106 (28%)
Frame = -2
Query: 244 GKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRV------SWN-------- 107
GK++H ++ G + V V N+L+ MYAK G ++ ++ VFDR+ SWN
Sbjct: 126 GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMN 185
Query: 106 ----------------RDTVSWTSMIISLAQHGLGEEAIELFEKML 17
RD VSW SMI QHG EA++ F +L
Sbjct: 186 CGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSIL 231
>ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 131 bits (329), Expect = 6e-29
Identities = 64/93 (68%), Positives = 80/93 (86%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRVSWNRD 101
LSV SSLAS+DHGKQ+H VAIR E SSVSVGNAL+TMY++ GSI+++R++F+ + RD
Sbjct: 419 LSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRD 478
Query: 100 TVSWTSMIISLAQHGLGEEAIELFEKMLAIGIK 2
T++WTSMI+SLAQHGLG EAIELFEKML I +K
Sbjct: 479 TLTWTSMILSLAQHGLGNEAIELFEKMLRINLK 511
>emb|CBI21484.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 130 bits (327), Expect = 1e-28
Identities = 63/88 (71%), Positives = 75/88 (85%)
Frame = -2
Query: 280 LSVSSSLASIDHGKQIHGVAIRSGEESSVSVGNALVTMYAKGGSIQNSRRVFDRVSWNRD 101
LSVSSSLAS+DHG+QIH A RSG SSVSV NAL+TMYAK GSI ++R VF+ + W RD
Sbjct: 284 LSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRD 343
Query: 100 TVSWTSMIISLAQHGLGEEAIELFEKML 17
T++WTSMII+LAQHGLGEEA+ LFE+ML
Sbjct: 344 TITWTSMIIALAQHGLGEEALTLFERML 371