BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035086
         (708 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi...   238   2e-63
ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|2...   228   5e-61
ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat...   232   9e-61
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...   229   2e-60
ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containi...   229   6e-60

>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Vitis vinifera]
          Length = 738

 Score =  238 bits (607), Expect(2) = 2e-63
 Identities = 113/213 (53%), Positives = 154/213 (72%)
 Frame = -1

Query: 708  AGLLNEAYTFIESMPLVPHTGVWGALLNACKIYGNVELAECASKHLVELDPQDGGYLAAM 529
            AGL +EA   +++M + P   +WG+LL AC+++GNVEL E A+KHL EL+P++ G    +
Sbjct: 516  AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575

Query: 528  SNIYANAGKWDNVAEVRKLMKAKRIRKLPGCSSIEINGEIHEFGVEEKIHPRSGEIYKMI 349
            SNIYA AG+WD+VA +R  +  K ++K+PGCSSIE++  +HEF V +K+H +S +IYKM+
Sbjct: 576  SNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKML 635

Query: 348  EHISKLLSLAGHVASXXXXXXXXXXXXXXKALFYHSEKLAIAFGLIATDKGTTLRVVKNL 169
            + I +LL  AGHV                 +L +HSEKLAIAFGLI+T   TT+R+VKNL
Sbjct: 636  DEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNL 695

Query: 168  RVCVDCHAAIKLISKIFNREIVVRDRSRFHHSK 70
            RVC +CH+AIKLISKIFNREI+ RDR+RFHH K
Sbjct: 696  RVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728



 Score = 30.8 bits (68), Expect(2) = 2e-63
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 76  FKEGSCSCKDYW 41
           FK+GSCSC DYW
Sbjct: 727 FKDGSCSCMDYW 738


>ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|222865669|gb|EEF02800.1|
            predicted protein [Populus trichocarpa]
          Length = 736

 Score =  228 bits (580), Expect(2) = 5e-61
 Identities = 108/213 (50%), Positives = 149/213 (69%)
 Frame = -1

Query: 708  AGLLNEAYTFIESMPLVPHTGVWGALLNACKIYGNVELAECASKHLVELDPQDGGYLAAM 529
            AGL +EA T +++M + P   +W +LL AC+I+  +ELAE  +KHL EL+P++      +
Sbjct: 514  AGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLL 573

Query: 528  SNIYANAGKWDNVAEVRKLMKAKRIRKLPGCSSIEINGEIHEFGVEEKIHPRSGEIYKMI 349
            SNIYA AG+W++VA++R  +   R++K+PGCSSIE++  +HEF V +K+HP+S EIYKM+
Sbjct: 574  SNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKML 633

Query: 348  EHISKLLSLAGHVASXXXXXXXXXXXXXXKALFYHSEKLAIAFGLIATDKGTTLRVVKNL 169
            + I   L  AG V                  L +HSEKLAIAFGLI+T  GTT+R++KNL
Sbjct: 634  DEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNL 693

Query: 168  RVCVDCHAAIKLISKIFNREIVVRDRSRFHHSK 70
            RVC +CH+A KLISKIFNREI+ RDR+RFHH K
Sbjct: 694  RVCGNCHSATKLISKIFNREIIARDRNRFHHFK 726



 Score = 33.1 bits (74), Expect(2) = 5e-61
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -3

Query: 76  FKEGSCSCKDYW 41
           FK+GSCSCKDYW
Sbjct: 725 FKDGSCSCKDYW 736


>ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  232 bits (592), Expect(2) = 9e-61
 Identities = 116/211 (54%), Positives = 145/211 (68%)
 Frame = -1

Query: 708  AGLLNEAYTFIESMPLVPHTGVWGALLNACKIYGNVELAECASKHLVELDPQDGGYLAAM 529
            AG L+EA  FI SMP+ PH G WGALLNACKIY N+E+ E AS+ +VEL+ ++ G    +
Sbjct: 393  AGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLL 452

Query: 528  SNIYANAGKWDNVAEVRKLMKAKRIRKLPGCSSIEINGEIHEFGVEEKIHPRSGEIYKMI 349
            SNIYA++  WD V+ VR+ M  K +RK PGCS IE+ GE+HEF V +K HPR  EI  M+
Sbjct: 453  SNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVML 512

Query: 348  EHISKLLSLAGHVASXXXXXXXXXXXXXXKALFYHSEKLAIAFGLIATDKGTTLRVVKNL 169
              IS+ L L+G+VA+               AL  HSEK+AIAFGLI+      +R+VKNL
Sbjct: 513  GEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNL 572

Query: 168  RVCVDCHAAIKLISKIFNREIVVRDRSRFHH 76
            RVC DCH A K+ISK FNREIVVRDR+RFHH
Sbjct: 573  RVCWDCHDATKMISKAFNREIVVRDRNRFHH 603



 Score = 27.7 bits (60), Expect(2) = 9e-61
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 76  FKEGSCSCKDYW 41
           F++G CSCK YW
Sbjct: 604 FRDGECSCKGYW 615


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  229 bits (584), Expect(2) = 2e-60
 Identities = 115/213 (53%), Positives = 145/213 (68%)
 Frame = -1

Query: 708  AGLLNEAYTFIESMPLVPHTGVWGALLNACKIYGNVELAECASKHLVELDPQDGGYLAAM 529
            AG L EA  FI +MPL PH G WGALLNAC++Y N+EL E AS+ L+E++ ++ G   ++
Sbjct: 392  AGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSL 451

Query: 528  SNIYANAGKWDNVAEVRKLMKAKRIRKLPGCSSIEINGEIHEFGVEEKIHPRSGEIYKMI 349
            SNIYA+ G WD V+ VR+ MKA+ I KLPGCS +E+NGE+HEF   +K HP    I  M 
Sbjct: 452  SNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMW 511

Query: 348  EHISKLLSLAGHVASXXXXXXXXXXXXXXKALFYHSEKLAIAFGLIATDKGTTLRVVKNL 169
              ISK L LAG+VAS               AL  HSEK+AIAFGL +  +G  +R+VKNL
Sbjct: 512  GEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNL 571

Query: 168  RVCVDCHAAIKLISKIFNREIVVRDRSRFHHSK 70
            R+C DCH   K+ISKIF REI+VRDR+RFHH K
Sbjct: 572  RICWDCHDVSKMISKIFEREIIVRDRNRFHHFK 604



 Score = 30.0 bits (66), Expect(2) = 2e-60
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 76  FKEGSCSCKDYW 41
           FK+G CSCKD+W
Sbjct: 603 FKDGECSCKDFW 614


>ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like
            [Vitis vinifera]
          Length = 640

 Score =  229 bits (584), Expect(2) = 6e-60
 Identities = 110/211 (52%), Positives = 144/211 (68%)
 Frame = -1

Query: 708  AGLLNEAYTFIESMPLVPHTGVWGALLNACKIYGNVELAECASKHLVELDPQDGGYLAAM 529
            AG+L++A T I+SMP  P++ +WGALLNAC+I+G+ EL E   K L+ELDP  GG    +
Sbjct: 418  AGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLL 477

Query: 528  SNIYANAGKWDNVAEVRKLMKAKRIRKLPGCSSIEINGEIHEFGVEEKIHPRSGEIYKMI 349
            SNIYA  G+WD VAE+R++M+ +++ K PGCS I++   IHEF   +  HP+   IY  +
Sbjct: 478  SNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKL 537

Query: 348  EHISKLLSLAGHVASXXXXXXXXXXXXXXKALFYHSEKLAIAFGLIATDKGTTLRVVKNL 169
              +S+ L  AG+                  AL +HSEKLAIAFGLI TD GTT+R+ KNL
Sbjct: 538  GEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNL 597

Query: 168  RVCVDCHAAIKLISKIFNREIVVRDRSRFHH 76
            RVC DCH+A KLISKI+NREI+VRDR RFHH
Sbjct: 598  RVCADCHSATKLISKIYNREIIVRDRCRFHH 628



 Score = 28.1 bits (61), Expect(2) = 6e-60
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 76  FKEGSCSCKDYW 41
           F++GSCSC D+W
Sbjct: 629 FRDGSCSCMDFW 640