BLASTX nr result

ID: Coptis23_contig00035073 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035073
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36614.3| unnamed protein product [Vitis vinifera]              125   5e-27
emb|CAN81813.1| hypothetical protein VITISV_020894 [Vitis vinifera]   123   2e-26
emb|CBI36603.3| unnamed protein product [Vitis vinifera]              114   1e-23
ref|XP_002325094.1| predicted protein [Populus trichocarpa] gi|2...   113   2e-23
emb|CAN67054.1| hypothetical protein VITISV_035706 [Vitis vinifera]   112   4e-23

>emb|CBI36614.3| unnamed protein product [Vitis vinifera]
          Length = 392

 Score =  125 bits (313), Expect = 5e-27
 Identities = 59/113 (52%), Positives = 71/113 (62%), Gaps = 6/113 (5%)
 Frame = -3

Query: 335 MSSDYKLTVPQSPVEPMDFLSRDWCKSTLQVFHPIALDQTVVLRDYPHKASANDVKAPLP 156
           M  D+K T+ ++  E MDFLSR WC   +Q   P   DQ+VV+ D P K   ND KAP P
Sbjct: 1   MDPDFKPTISEAHPETMDFLSRAWCNFAVQAIQPELQDQSVVILDNPIKKFGNDTKAPFP 60

Query: 155 KMDRSTNMD------VPPWIGKDIKSWIWLQQAMHPEINYHSCFRKKLFPWKM 15
           KMD S  MD       PPW   D+KSWIW+QQAMHPE+NY+S FRKK   WK+
Sbjct: 61  KMDNSVKMDDAGIKSPPPWKTNDVKSWIWMQQAMHPELNYNSYFRKKWISWKI 113


>emb|CAN81813.1| hypothetical protein VITISV_020894 [Vitis vinifera]
          Length = 417

 Score =  123 bits (308), Expect = 2e-26
 Identities = 58/113 (51%), Positives = 71/113 (62%), Gaps = 6/113 (5%)
 Frame = -3

Query: 335 MSSDYKLTVPQSPVEPMDFLSRDWCKSTLQVFHPIALDQTVVLRDYPHKASANDVKAPLP 156
           M  D+K T+ ++  E MDFLSR WC   +Q   P   DQ+VV+ D P K   ND KAP P
Sbjct: 26  MDPDFKPTISEAHPETMDFLSRAWCNFAVQAIQPELQDQSVVILDNPIKKFGNDTKAPFP 85

Query: 155 KMDRSTNMD------VPPWIGKDIKSWIWLQQAMHPEINYHSCFRKKLFPWKM 15
           K+D S  MD       PPW   D+KSWIW+QQAMHPE+NY+S FRKK   WK+
Sbjct: 86  KIDNSVKMDDAGIKSPPPWKTNDVKSWIWMQQAMHPELNYNSHFRKKWISWKI 138


>emb|CBI36603.3| unnamed protein product [Vitis vinifera]
          Length = 392

 Score =  114 bits (284), Expect = 1e-23
 Identities = 54/113 (47%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
 Frame = -3

Query: 335 MSSDYKLTVPQSPVEPMDFLSRDWCKSTLQVFHPIALDQTVVLRDYPHKASANDVKAPLP 156
           M  D+K T+ ++  E MDFLS  WC   +Q   P   DQ++V+ D P K    D KAP P
Sbjct: 1   MEPDFKPTISEAHPETMDFLSPAWCNFAVQAIQPELQDQSLVILDNPIKKFGYDTKAPFP 60

Query: 155 KMDRSTNMD------VPPWIGKDIKSWIWLQQAMHPEINYHSCFRKKLFPWKM 15
           KMD+S  +D       P W   D+KSWIW+QQAMHPE+NY+S FRKK   WK+
Sbjct: 61  KMDQSVKVDDAGIKSPPAWKPNDVKSWIWMQQAMHPELNYNSYFRKKWLSWKI 113


>ref|XP_002325094.1| predicted protein [Populus trichocarpa] gi|222866528|gb|EEF03659.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/121 (48%), Positives = 72/121 (59%), Gaps = 10/121 (8%)
 Frame = -3

Query: 335 MSSDYKLTVPQSPVEPMDFLSRDWCKSTLQVFHPIALDQTVVLRDYPHKASANDV-KAPL 159
           M S  K +  ++  E MDFLS  WC   +Q   P   +Q ++L D P K    DV K P 
Sbjct: 1   MDSIMKPSPSEAHPETMDFLSSTWCNFAVQALQPDLQNQPIILLDNPIKKLDCDVMKPPF 60

Query: 158 PKMDRSTNMD-----VPPWIGKDIKSWIWLQQAMHPEINYHSCFRKK----LFPWKMTTP 6
            KMD+S  MD     +PPW   D+KSWIW+QQAMHPE+NY+SCFRKK    LFPWK   P
Sbjct: 61  SKMDKSVKMDDAFKSLPPWKSNDMKSWIWMQQAMHPELNYNSCFRKKWVHNLFPWKNILP 120

Query: 5   F 3
           F
Sbjct: 121 F 121


>emb|CAN67054.1| hypothetical protein VITISV_035706 [Vitis vinifera]
          Length = 392

 Score =  112 bits (279), Expect = 4e-23
 Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
 Frame = -3

Query: 335 MSSDYKLTVPQSPVEPMDFLSRDWCKSTLQVFHPIALDQTVVLRDYPHKASANDVKAPLP 156
           M  D+K T+ ++  E MDFLS  WC   +Q   P   DQ++V+ D P K    D K P P
Sbjct: 1   MEPDFKPTISEAHPETMDFLSPAWCNFAVQAIQPELQDQSLVILDNPIKKFGYDTKXPFP 60

Query: 155 KMDRSTNMD------VPPWIGKDIKSWIWLQQAMHPEINYHSCFRKKLFPWKM 15
           KMD+S  +D       P W   D+KSWIW+QQAMHPE+NY+S FRKK   WK+
Sbjct: 61  KMDQSVKVDDAGIKSPPXWKPNDVKSWIWMQQAMHPELNYNSYFRKKWLSWKI 113


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