BLASTX nr result

ID: Coptis23_contig00035010 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00035010
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus c...    98   6e-19
emb|CBI30142.3| unnamed protein product [Vitis vinifera]               95   7e-18
ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805...    84   1e-14
ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|2...    83   3e-14
ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arab...    76   3e-12

>ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus communis]
           gi|223541341|gb|EEF42892.1| hypothetical protein
           RCOM_1354150 [Ricinus communis]
          Length = 612

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/100 (52%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
 Frame = +2

Query: 56  GKTVKSNAELCNEIREFVSMVGLPQGYVPTFNDLVNHGRKDLAHIVRRRGYKVITERLTN 235
           G+ VKSN ELCN+IREFVS VGLPQG+VP+  +L +HGR DLAHIVRRRGYK+I E L+N
Sbjct: 38  GRKVKSNVELCNDIREFVSAVGLPQGHVPSMKELSDHGRNDLAHIVRRRGYKLIRELLSN 97

Query: 236 SAE----GDTTAEMSSADKQKARNSYENDSVGQEQEVSEV 343
           S E    G    +     K    +S      GQ+ +V +V
Sbjct: 98  SVESELGGSNIKKSVDEVKDTITDSIYISEEGQDGKVEDV 137


>emb|CBI30142.3| unnamed protein product [Vitis vinifera]
          Length = 471

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 46/98 (46%), Positives = 69/98 (70%), Gaps = 3/98 (3%)
 Frame = +2

Query: 59  KTVKSNAELCNEIREFVSMVGLPQGYVPTFNDLVNHGRKDLAHIVRRRGYKVITERLTNS 238
           + VKS+ ELCN+IREFVS VGLP+G++P+  +L  HGR DLA+IVRRRGYK I + L+++
Sbjct: 57  RKVKSDQELCNDIREFVSAVGLPEGHLPSMKELSQHGRTDLANIVRRRGYKHIKDLLSSA 116

Query: 239 AEGDTT---AEMSSADKQKARNSYENDSVGQEQEVSEV 343
            + DT       S  + Q A + YE++S GQ+++  ++
Sbjct: 117 TKTDTNEFDVGESLTENQDATSDYEDESTGQDEKAKDL 154


>ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805984 [Glycine max]
          Length = 622

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 45/113 (39%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
 Frame = +2

Query: 8   ASSTKPSSRGSVEVKKGKTVKSNAELCNEIREFVSMVGLPQGYVPTFNDLVNHGRKDLAH 187
           + +T  +S      +K + +KS++E+CN+IR+F+  VGLP+ ++P+  +L+ HG  DLA+
Sbjct: 44  SQTTTTTSTTRTRTRKSRRLKSDSEICNDIRQFLDSVGLPEDHIPSTKELLLHGWNDLAN 103

Query: 188 IVRRRGYKVITERLTNS---AEGD-TTAEMSSADKQKARNSYENDSVGQEQEV 334
           IVRRRG+K I E LT S   A+ D  +AE S  ++  A N +E+   GQ + V
Sbjct: 104 IVRRRGHKQIQELLTRSSLNADVDILSAETSLDERLDAANGFEDPLTGQNETV 156


>ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|222833394|gb|EEE71871.1|
           predicted protein [Populus trichocarpa]
          Length = 626

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/109 (39%), Positives = 75/109 (68%), Gaps = 8/109 (7%)
 Frame = +2

Query: 38  SVEVKKG-KTVKSNAELCNEIREFVSMVGLPQGYVPTFNDLVNHGRKDLAHIVRRRGYKV 214
           S++  +G + V++N ELCN++REF+S   LP+G+VP+  +L +HGR DLA++VRRRGYK+
Sbjct: 40  SIKKPRGSRKVRNNVELCNDLREFLSTFELPEGHVPSIKELQDHGRNDLANVVRRRGYKL 99

Query: 215 ITERLTNSAEGDTTAEMSSADKQKARN----SYENDSV---GQEQEVSE 340
           I + L++S E D+  E+ + +K  A+     ++  D +   GQ+++V +
Sbjct: 100 IRDLLSSSTESDSD-ELPNMEKNLAKGQDTINHSADIIATEGQDEKVKD 147


>ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp.
           lyrata] gi|297316870|gb|EFH47292.1| hypothetical protein
           ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata]
          Length = 636

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 39/64 (60%), Positives = 46/64 (71%)
 Frame = +2

Query: 59  KTVKSNAELCNEIREFVSMVGLPQGYVPTFNDLVNHGRKDLAHIVRRRGYKVITERLTNS 238
           K VKSN EL +EI EFV+  GLPQG+VP+  +L  HGR DLA+IVRRRGYK I E + NS
Sbjct: 61  KRVKSNEELRSEIMEFVASAGLPQGHVPSMKELSAHGRVDLANIVRRRGYKFIKELVANS 120

Query: 239 AEGD 250
              D
Sbjct: 121 DTED 124


Top