BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034994
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16436.3| unnamed protein product [Vitis vinifera]              153   1e-35
ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containi...   153   1e-35
ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   150   1e-34
ref|XP_003619639.1| Pentatricopeptide repeat-containing protein ...   147   1e-33
ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28

>emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  153 bits (387), Expect = 1e-35
 Identities = 79/135 (58%), Positives = 94/135 (69%)
 Frame = +2

Query: 8   SLTYAHNVFAQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDLSVVPNRYTFVFV 187
           SL+YAH +F Q P PD+FIYNTMIKAH      S  S+ +F S VR    +PNRYTFVFV
Sbjct: 37  SLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFV 96

Query: 188 LKACSCGLRILEGEQVCAHAVKLGLNSNVFVVNVMIKKYAELGLVGFARKVFDGTSNITS 367
            KAC  GL +LEGEQ+  HA+K+GL SN+FV N MI+ YA  GLV  AR+VFD +     
Sbjct: 97  FKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS---LD 153

Query: 368 RDLCSWNSMIGGYVG 412
           +DL SWN MIGGYVG
Sbjct: 154 QDLYSWNIMIGGYVG 168


>ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  153 bits (387), Expect = 1e-35
 Identities = 79/135 (58%), Positives = 94/135 (69%)
 Frame = +2

Query: 8   SLTYAHNVFAQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDLSVVPNRYTFVFV 187
           SL+YAH +F Q P PD+FIYNTMIKAH      S  S+ +F S VR    +PNRYTFVFV
Sbjct: 64  SLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFV 123

Query: 188 LKACSCGLRILEGEQVCAHAVKLGLNSNVFVVNVMIKKYAELGLVGFARKVFDGTSNITS 367
            KAC  GL +LEGEQ+  HA+K+GL SN+FV N MI+ YA  GLV  AR+VFD +     
Sbjct: 124 FKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS---LD 180

Query: 368 RDLCSWNSMIGGYVG 412
           +DL SWN MIGGYVG
Sbjct: 181 QDLYSWNIMIGGYVG 195


>ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  150 bits (379), Expect = 1e-34
 Identities = 76/136 (55%), Positives = 94/136 (69%)
 Frame = +2

Query: 5   SSLTYAHNVFAQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDLSVVPNRYTFVF 184
           +SL+YAH +F Q P PD+FIYNTMIKAH  + H    SL+VFRS  +DL + PNRY+FVF
Sbjct: 61  ASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVF 120

Query: 185 VLKACSCGLRILEGEQVCAHAVKLGLNSNVFVVNVMIKKYAELGLVGFARKVFDGTSNIT 364
              AC  GL + EGEQV  HAVK+GL +NVFVVN +I  Y + GLVG ++KVF       
Sbjct: 121 AFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWA---V 177

Query: 365 SRDLCSWNSMIGGYVG 412
            RDL SWN++I  YVG
Sbjct: 178 DRDLYSWNTLIAAYVG 193


>ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494654|gb|AES75857.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  147 bits (370), Expect = 1e-33
 Identities = 75/137 (54%), Positives = 92/137 (67%)
 Frame = +2

Query: 2   LSSLTYAHNVFAQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDLSVVPNRYTFV 181
           L+SLTYAH +F Q P PD+FIYNTMIK+H  + H    S+ VFRS +RD    PNRY+FV
Sbjct: 223 LASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFV 282

Query: 182 FVLKACSCGLRILEGEQVCAHAVKLGLNSNVFVVNVMIKKYAELGLVGFARKVFDGTSNI 361
           F   AC  G+ + EGEQV  HAVK+GL+ NVFVVN +I  + + G V  AR VFD   + 
Sbjct: 283 FAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFD---SA 339

Query: 362 TSRDLCSWNSMIGGYVG 412
             RD  SWN+MIG YVG
Sbjct: 340 VDRDFYSWNTMIGAYVG 356


>ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
           gi|449516005|ref|XP_004165038.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  130 bits (326), Expect = 1e-28
 Identities = 65/132 (49%), Positives = 85/132 (64%)
 Frame = +2

Query: 11  LTYAHNVFAQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDLSVVPNRYTFVFVL 190
           ++YAH VF  FP PD+F+YNT+IK    +   S  S   FRS +R+  +VPN+Y+F F  
Sbjct: 50  ISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAF 109

Query: 191 KACSCGLRILEGEQVCAHAVKLGLNSNVFVVNVMIKKYAELGLVGFARKVFDGTSNITSR 370
           K C  G+ +LEGEQV  HA+KLGL +N+FV N +I  Y  L  V  ARKVFD + N   R
Sbjct: 110 KGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPN---R 166

Query: 371 DLCSWNSMIGGY 406
           D+ SWN M+ GY
Sbjct: 167 DMYSWNIMLSGY 178



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 35/135 (25%), Positives = 63/135 (46%)
 Frame = +2

Query: 2   LSSLTYAHNVFAQFPCPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDLSVVPNRYTFV 181
           L  +  A  +F + P  D+  + TMI   +   +F     +      + +S  PN YT  
Sbjct: 181 LGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMS--PNEYTLA 238

Query: 182 FVLKACSCGLRILEGEQVCAHAVKLGLNSNVFVVNVMIKKYAELGLVGFARKVFDGTSNI 361
             L AC+  + + +G  +  +  K  +  N  ++  +I  YA+ G + FA K+F+    +
Sbjct: 239 SSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRL 298

Query: 362 TSRDLCSWNSMIGGY 406
             R +  WN+MIGG+
Sbjct: 299 -KRKVWPWNAMIGGF 312