BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034980
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   160   1e-37
ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   157   6e-37
emb|CBI31781.3| unnamed protein product [Vitis vinifera]              136   2e-30
ref|NP_001054300.1| Os04g0682900 [Oryza sativa Japonica Group] g...   129   2e-28
emb|CAE03438.1| OSJNBa0032F06.21 [Oryza sativa Japonica Group]        129   2e-28

>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
           gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
           MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  160 bits (405), Expect = 1e-37
 Identities = 91/165 (55%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
 Frame = -1

Query: 492 LCDRTSISSRLDAVSEIEESMAP-STKQDGGSVDNEDECVAHVIPLINDXXXXXXXXXXX 316
           LCDR  IS+RLDAVSEI ESM      Q+ G  D ED  VA + P               
Sbjct: 467 LCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLEMLGR 526

Query: 315 XTDIQRGITRIFHRTATTFEFIAVVHTILYAGKQLQQLQVEHKDSNEELQKKTVHSALLR 136
             DIQRGITRIFHRTAT  EFIAV+  IL AGKQL++LQ+E + +N+ +Q KTV S LL+
Sbjct: 527 SPDIQRGITRIFHRTATASEFIAVIQAILIAGKQLRRLQIEEEQNNKRVQAKTVRSVLLK 586

Query: 135 GLILTASSPTVVNHVAKLLSLHNKDAADQMDLQNLFIASDGQFPE 1
            LILT SS +VV H AKLLS  NK+AA+  DL NL + S+GQFPE
Sbjct: 587 KLILTVSSSSVVGHAAKLLSTLNKEAAEHGDLTNLIVISNGQFPE 631


>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  157 bits (398), Expect = 6e-37
 Identities = 89/165 (53%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
 Frame = -1

Query: 492 LCDRTSISSRLDAVSEIEESMAP-STKQDGGSVDNEDECVAHVIPLINDXXXXXXXXXXX 316
           LCD   IS+RLDAVSEI  SM      Q+ G +D  D  V +V P +N            
Sbjct: 476 LCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQPEVNYLLSSVLTTLGR 535

Query: 315 XTDIQRGITRIFHRTATTFEFIAVVHTILYAGKQLQQLQVEHKDSNEELQKKTVHSALLR 136
             DIQRG+TRIFHRTAT  EFI+V   IL+AGKQLQ+L +E KD +E+ Q ++V S LLR
Sbjct: 536 SPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSVLLR 595

Query: 135 GLILTASSPTVVNHVAKLLSLHNKDAADQMDLQNLFIASDGQFPE 1
            LILTASS  ++ + AKLLS  NK+AAD+ DL NLFI S GQFPE
Sbjct: 596 KLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPE 640


>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
          Length = 903

 Score =  136 bits (342), Expect = 2e-30
 Identities = 83/165 (50%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
 Frame = -1

Query: 492 LCDRTSISSRLDAVSEIEESMAP-STKQDGGSVDNEDECVAHVIPLINDXXXXXXXXXXX 316
           LCD   IS+RLDAVSEI  SM      Q+ G                             
Sbjct: 364 LCDSNMISARLDAVSEIVMSMGSCKASQNFGR---------------------------- 395

Query: 315 XTDIQRGITRIFHRTATTFEFIAVVHTILYAGKQLQQLQVEHKDSNEELQKKTVHSALLR 136
             DIQRG+TRIFHRTAT  EFI+V   IL+AGKQLQ+L +E KD +E+ Q ++V S LLR
Sbjct: 396 SPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSVLLR 455

Query: 135 GLILTASSPTVVNHVAKLLSLHNKDAADQMDLQNLFIASDGQFPE 1
            LILTASS  ++ + AKLLS  NK+AAD+ DL NLFI S GQFPE
Sbjct: 456 KLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPE 500


>ref|NP_001054300.1| Os04g0682900 [Oryza sativa Japonica Group]
           gi|113565871|dbj|BAF16214.1| Os04g0682900 [Oryza sativa
           Japonica Group]
          Length = 813

 Score =  129 bits (324), Expect = 2e-28
 Identities = 83/165 (50%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
 Frame = -1

Query: 492 LCDRTSISSRLDAVSEIEESMAPSTKQDGGSVDNED-ECVAHVIPLINDXXXXXXXXXXX 316
           LCDR  I +R DAVSEI ES+           D  D  C + V   ++            
Sbjct: 459 LCDRNQICTRHDAVSEISESIGSQQYSTNNLQDEVDMSCSSSVRSDLSTILSSVLRMLAG 518

Query: 315 XTDIQRGITRIFHRTATTFEFIAVVHTILYAGKQLQQLQVEHKDSNEELQKKTVHSALLR 136
             DIQRGITRIFH  AT  EF+ VV  IL AGKQLQ+L +E  D+    Q +TVHS LLR
Sbjct: 519 TLDIQRGITRIFHCKATAKEFVGVVQAILTAGKQLQKLVLEDTDTMSS-QHRTVHSPLLR 577

Query: 135 GLILTASSPTVVNHVAKLLSLHNKDAADQMDLQNLFIASDGQFPE 1
            LI TASS TV+ + A L+S  NKDAADQ D+ NLFIAS  QFPE
Sbjct: 578 RLINTASSCTVLANAATLVSCLNKDAADQGDMLNLFIASVDQFPE 622


>emb|CAE03438.1| OSJNBa0032F06.21 [Oryza sativa Japonica Group]
          Length = 1085

 Score =  129 bits (324), Expect = 2e-28
 Identities = 83/165 (50%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
 Frame = -1

Query: 492 LCDRTSISSRLDAVSEIEESMAPSTKQDGGSVDNED-ECVAHVIPLINDXXXXXXXXXXX 316
           LCDR  I +R DAVSEI ES+           D  D  C + V   ++            
Sbjct: 459 LCDRNQICTRHDAVSEISESIGSQQYSTNNLQDEVDMSCSSSVRSDLSTILSSVLRMLAG 518

Query: 315 XTDIQRGITRIFHRTATTFEFIAVVHTILYAGKQLQQLQVEHKDSNEELQKKTVHSALLR 136
             DIQRGITRIFH  AT  EF+ VV  IL AGKQLQ+L +E  D+    Q +TVHS LLR
Sbjct: 519 TLDIQRGITRIFHCKATAKEFVGVVQAILTAGKQLQKLVLEDTDTMSS-QHRTVHSPLLR 577

Query: 135 GLILTASSPTVVNHVAKLLSLHNKDAADQMDLQNLFIASDGQFPE 1
            LI TASS TV+ + A L+S  NKDAADQ D+ NLFIAS  QFPE
Sbjct: 578 RLINTASSCTVLANAATLVSCLNKDAADQGDMLNLFIASVDQFPE 622