BLASTX nr result

ID: Coptis23_contig00034978 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034978
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japo...    95   5e-18
gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indi...    95   5e-18
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    94   9e-18
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    94   2e-17
gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japo...    94   2e-17

>gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japonica Group]
          Length = 662

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 42/77 (54%), Positives = 61/77 (79%)
 Frame = -3

Query: 265 LPSDFNHTNISLIPKIPSPNLIKNFRPISLCNILYRLISKIMANRLKSVLDKIISPFQSA 86
           +P ++N T I LIPK+P P  IK+ RPISLCN+LY+++SK++ANRLK++L ++ISP QSA
Sbjct: 174 MPPEWNETIIVLIPKVPKPENIKDLRPISLCNVLYKIVSKVLANRLKTILPEVISPTQSA 233

Query: 85  FVKNRQITDNTILLQEI 35
           FV  R I+DN ++  E+
Sbjct: 234 FVPGRLISDNILVAYEM 250


>gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indica Group]
          Length = 1300

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 42/81 (51%), Positives = 60/81 (74%)
 Frame = -3

Query: 280 FKLCLLPSDFNHTNISLIPKIPSPNLIKNFRPISLCNILYRLISKIMANRLKSVLDKIIS 101
           F   ++P D N T I LIPK+  P+ +K+FRPISLCN+LY+++SK + NR++ +LD+++S
Sbjct: 397 FHTGVMPDDVNETTIVLIPKVAQPSQLKDFRPISLCNVLYKVVSKCLVNRMRPILDEVVS 456

Query: 100 PFQSAFVKNRQITDNTILLQE 38
           P QSAFV  R ITDN +L  E
Sbjct: 457 PNQSAFVPGRLITDNALLAFE 477


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 43/76 (56%), Positives = 58/76 (76%)
 Frame = -3

Query: 262 PSDFNHTNISLIPKIPSPNLIKNFRPISLCNILYRLISKIMANRLKSVLDKIISPFQSAF 83
           P  FN T I LIPK+  P L K+FRPI LCNI+Y++++K++ NRLK +L  +ISP Q +F
Sbjct: 488 PEGFNDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSF 547

Query: 82  VKNRQITDNTILLQEI 35
           V NRQITDN I++QE+
Sbjct: 548 VPNRQITDNVIIVQEM 563


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 42/77 (54%), Positives = 58/77 (75%)
 Frame = -3

Query: 265  LPSDFNHTNISLIPKIPSPNLIKNFRPISLCNILYRLISKIMANRLKSVLDKIISPFQSA 86
            +P  +N T + LIPK+P+P  IK+ RPISLCN++Y++ SK++ANRLK +L +IISP Q A
Sbjct: 937  MPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIA 996

Query: 85   FVKNRQITDNTILLQEI 35
            FV  R ITDN +L  E+
Sbjct: 997  FVPQRMITDNILLAYEL 1013


>gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japonica Group]
          Length = 825

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 42/77 (54%), Positives = 58/77 (75%)
 Frame = -3

Query: 265 LPSDFNHTNISLIPKIPSPNLIKNFRPISLCNILYRLISKIMANRLKSVLDKIISPFQSA 86
           +P  +N T + LIPK+P+P  IK+ RPISLCN++Y++ SK++ANRLK +L +IISP Q A
Sbjct: 438 MPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIA 497

Query: 85  FVKNRQITDNTILLQEI 35
           FV  R ITDN +L  E+
Sbjct: 498 FVPQRMITDNILLAYEL 514


Top