BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034974
         (597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...   171   1e-40
ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containi...   146   3e-33
ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containi...   145   5e-33
ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containi...   134   2e-29
emb|CBI20254.3| unnamed protein product [Vitis vinifera]              133   2e-29

>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  171 bits (432), Expect = 1e-40
 Identities = 78/130 (60%), Positives = 100/130 (76%)
 Frame = +1

Query: 208 NVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLLDFYSKVGDLSSA 387
           +V P  T+FS+ILR+       ++GE+FHC I K+GF Y++ LQTGLLDFY+KVGDL  A
Sbjct: 5   DVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCA 64

Query: 388 KKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRMREKTSSSWNTVISCYCKLGDVE 567
           K++F  MP RDVVA NAMISAL  HGY++E R LFD M E+ S SWN++I+CYCKLGD+ 
Sbjct: 65  KRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDIN 124

Query: 568 SARMLFDSNP 597
           SAR++FD NP
Sbjct: 125 SARLMFDCNP 134



 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
 Frame = +1

Query: 58  CQSKKIDYAL-LFLQNIHTPNSSLYNTFIKDSIKCQE-QFVVGIYNTMRRYGNVEPDNTT 231
           C+SK++  A  LFL      NS  +NT I   ++C E    + ++  M+   NV+P   T
Sbjct: 149 CKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSE-NVKPTEVT 207

Query: 232 FSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLLDFYSKVGDLSSAKKLFDDMP 411
              +L A     ++ +GE  H +I       ++ L   L+D Y K G L +A  +F  + 
Sbjct: 208 MVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS 267

Query: 412 ERDVVACNAMISALGMHGYLKEGRELFDRMREK 510
            +++   N++I  LGM+G  +E    F  M ++
Sbjct: 268 RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKE 300


>ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  146 bits (368), Expect = 3e-33
 Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
 Frame = +1

Query: 31  LLSHFLSSCCQSKKIDYALLFLQNIHTPNSSLYNTFIKDSIKCQEQF-VVGIYNTMRRYG 207
           L+  F+S+      + Y +     +  PN  +YN  IK  + C   F  +  Y  M    
Sbjct: 170 LVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEES 229

Query: 208 NVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLLDFYSKVGDLSSA 387
           NV P + TFS +++A     ++++G+  HCHI+K GF   LF+QT L+DFYSK+  LS A
Sbjct: 230 NVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEA 289

Query: 388 KKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRMREKTSSSWNTVISCYCKLGDVE 567
           +K+FD+M ERD  A  AM+SAL   G +   R+LF+ M E+ +++WNT+I  Y +LG+VE
Sbjct: 290 RKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVE 349

Query: 568 SARMLFDSNP 597
           SA +LF+  P
Sbjct: 350 SAELLFNQMP 359



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
 Frame = +1

Query: 160 QEQFVVGIYNTMRRYGNVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQ 339
           Q Q  + IY+ MR  G + PD  T S +  A     ++++G+  H ++   G   ++++ 
Sbjct: 378 QYQDALAIYSEMRLNGII-PDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIG 436

Query: 340 TGLLDFYSKVGDLSSAKKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRM-REKTS 516
           + L+D Y+K G L  +  +F  + ++++   NA+I  L +HGY ++   +F  M REK  
Sbjct: 437 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 496

Query: 517 SSWNTVIS 540
            +  T IS
Sbjct: 497 PNGVTFIS 504


>ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  145 bits (366), Expect = 5e-33
 Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
 Frame = +1

Query: 31  LLSHFLSSCCQSKKIDYALLFLQNIHTPNSSLYNTFIKDSIKCQEQF-VVGIYNTMRRYG 207
           L+  F+S+      + Y +     +  PN  +YN  IK  + C   F  +  Y  M    
Sbjct: 73  LVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEES 132

Query: 208 NVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLLDFYSKVGDLSSA 387
           NV P + TFS +++A     ++++G+  HCHI+K GF   LF+QT L+DFYSK+  LS A
Sbjct: 133 NVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEA 192

Query: 388 KKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRMREKTSSSWNTVISCYCKLGDVE 567
           +K+FD+M ERD  A  AM+SAL   G +   R+LF+ M E+ +++WNT+I  Y +LG+VE
Sbjct: 193 RKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVE 252

Query: 568 SARMLFDSNP 597
           SA +LF+  P
Sbjct: 253 SAELLFNQMP 262



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
 Frame = +1

Query: 160 QEQFVVGIYNTMRRYGNVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQ 339
           Q Q  + IY+ MR  G + PD  T S +  A     ++++G+  H ++   G   ++++ 
Sbjct: 281 QYQDALAIYSEMRLNGII-PDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIG 339

Query: 340 TGLLDFYSKVGDLSSAKKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRM-REKTS 516
           + L+D Y+K G L  +  +F  + ++++   NA+I  L +HGY ++   +F  M REK  
Sbjct: 340 SALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIM 399

Query: 517 SSWNTVIS 540
            +  T IS
Sbjct: 400 PNGVTFIS 407


>ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  134 bits (336), Expect = 2e-29
 Identities = 72/191 (37%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
 Frame = +1

Query: 31  LLSHFLSSCCQSKKIDYALLFLQNIHTPNSSLYNTFIKDSIKC--QEQFVVGIYNTMRRY 204
           L++ F+S+C     I+ A     N+  PN  ++N  I+  + C   EQ +V   + +R  
Sbjct: 12  LVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRN- 70

Query: 205 GNVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLLDFYSKVGDLSS 384
            NV P + +FS +++A         GE+ H H++K GF   +F+QT L++FYS  GD+  
Sbjct: 71  -NVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGG 129

Query: 385 AKKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRMREKTSSSWNTVISCYCKLGDV 564
           ++++FDDMPERDV A   MISA    G +     LFD M EK  ++WN +I  Y KLG+ 
Sbjct: 130 SRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNA 189

Query: 565 ESARMLFDSNP 597
           ESA  LF+  P
Sbjct: 190 ESAEFLFNQMP 200



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
 Frame = +1

Query: 172 VVGIYNTMRRYGNVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLL 351
           V+ +++ +   G + PD  T + ++ A     ++ +G+  H ++   GF  ++++ + L+
Sbjct: 223 VIALFHDVIDKGMI-PDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLI 281

Query: 352 DFYSKVGDLSSAKKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRMREK----TSS 519
           D Y+K G +  A  +F  +  +++   N +I  L  HGY++E   +F  M  K     + 
Sbjct: 282 DMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAV 341

Query: 520 SWNTVISCYCKLGDVESARMLFDS 591
           ++ ++++     G +E  R  F S
Sbjct: 342 TFISILTACTHAGFIEEGRRWFMS 365


>emb|CBI20254.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  133 bits (335), Expect = 2e-29
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
 Frame = +1

Query: 31  LLSHFLSSCCQSKKIDYALLFLQNIHTPNSSLYNTFIKDSIKCQEQF-VVGIYNTMRRYG 207
           L++ F+++C    +IDYA+L   ++  PN  +YN  I+  ++C      +  Y  M +  
Sbjct: 46  LMNQFIAACSIFHRIDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQ-A 104

Query: 208 NVEPDNTTFSMILRASVGFSSIKIGESFHCHIFKLGFGYELFLQTGLLDFYSKVGDLSSA 387
            V P + TFS +++A    S +  GE+ H HI+K GF   +F+QT L+DFY   G +  A
Sbjct: 105 QVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEA 164

Query: 388 KKLFDDMPERDVVACNAMISALGMHGYLKEGRELFDRMREKTSSSWNTVISCYCKLGDVE 567
           +++FD+M ERDV A   MIS     G +   R+LFD M  + ++SWN +I  Y +L +VE
Sbjct: 165 RRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVE 224

Query: 568 SARMLFDSNP 597
           SA +LF   P
Sbjct: 225 SAELLFSQMP 234