BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034972
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    62   5e-08
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    60   1e-07
ref|XP_002519019.1| conserved hypothetical protein [Ricinus comm...    57   2e-06
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    57   2e-06
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    55   8e-06

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 26/49 (53%), Positives = 35/49 (71%)
 Frame = -1

Query: 246 TEDSKSIHTVGWDIICKPKASGGLGLRKATDMNQAMLAKLSWKALTDKK 100
           T + K  H + W  ICKPKA GG+GLR A DMN+A++AK+ W+ L DK+
Sbjct: 693 TMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKE 741


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 35/48 (72%)
 Frame = -1

Query: 246 TEDSKSIHTVGWDIICKPKASGGLGLRKATDMNQAMLAKLSWKALTDK 103
           T + +  H + W  +C+PKA+GGLGLR + DMN+A+LAK+ W+ L DK
Sbjct: 628 TVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDK 675


>ref|XP_002519019.1| conserved hypothetical protein [Ricinus communis]
           gi|223541682|gb|EEF43230.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 148

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = -1

Query: 228 IHTVGWDIICKPKASGGLGLRKATDMNQAMLAKLSWKALTDKK 100
           +H + WD ICKPK+ GGLGLR+A D N  ML KL WK L  ++
Sbjct: 1   MHLLSWDKICKPKSRGGLGLREAVDFNTIMLMKLEWKYLLQQE 43


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 20/40 (50%), Positives = 31/40 (77%)
 Frame = -1

Query: 225 HTVGWDIICKPKASGGLGLRKATDMNQAMLAKLSWKALTD 106
           H + W  +CKP++ GGLG+RKA DMN+A+L+K+ W+ + D
Sbjct: 362 HLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQD 401


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
          Length = 947

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 19/46 (41%), Positives = 33/46 (71%)
 Frame = -1

Query: 240 DSKSIHTVGWDIICKPKASGGLGLRKATDMNQAMLAKLSWKALTDK 103
           + K +H V WD +C PK+ GGLG+R +  MN+A+++K+ W+ + D+
Sbjct: 509 EKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDR 554