BLASTX nr result

ID: Coptis23_contig00034964 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034964
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313344.1| predicted protein [Populus trichocarpa] gi|2...    98   8e-19
ref|XP_002282660.2| PREDICTED: uncharacterized protein LOC100267...    97   1e-18
emb|CBI16355.3| unnamed protein product [Vitis vinifera]               97   1e-18
ref|XP_002299902.1| predicted protein [Populus trichocarpa] gi|2...    93   3e-17
ref|XP_002513492.1| conserved hypothetical protein [Ricinus comm...    92   6e-17

>ref|XP_002313344.1| predicted protein [Populus trichocarpa] gi|222849752|gb|EEE87299.1|
           predicted protein [Populus trichocarpa]
          Length = 504

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2   TPKILNIPRRHRRKTTTKQLPRNNNPLSDIQRSTYRGKLESLFDQERVFSRTSVPIVLLN 181
           TP+IL++PRR RRK    Q+P+ N      QR   +GKLE+LFDQER F+R  VPI++ +
Sbjct: 25  TPRILHLPRRPRRKP---QVPKANATKPSSQRDE-KGKLEALFDQERGFARGVVPIMMAS 80

Query: 182 SFNDSE--RTQRRERVXXXXXXXXXXXXXXXXXRL*AEILRAECNFFCMEHNIELKKLEL 355
                +    +RRERV                 R  AE+LRAECN   ME  I +KK+E 
Sbjct: 81  GSRGYQCFEEERRERVEERESVVMEEEKW----RFQAEMLRAECNLLRMEREIAVKKMER 136

Query: 356 NRVQTKRTLRSAVETLVSGK 415
            RVQ +R LRSAVETL+SG+
Sbjct: 137 RRVQMERILRSAVETLLSGR 156


>ref|XP_002282660.2| PREDICTED: uncharacterized protein LOC100267248 [Vitis vinifera]
          Length = 507

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2   TPKILNIPRRHRRKTTTKQLPRNNNPLSD--IQRSTYRGKLESLFDQERVFSRTSVPIVL 175
           +P+ILN+P RHRR+           P +D  ++RS  R KLE+LF QER FS+T VPIV+
Sbjct: 18  SPRILNLPHRHRRRPPKP-------PAADFLLRRSCRRAKLETLFHQERAFSKT-VPIVV 69

Query: 176 LNSFNDSERTQRRERVXXXXXXXXXXXXXXXXXRL*AEILRAECNFFCMEHNIELKKLEL 355
            +S    ER +R E                   R+ AEILRAECNF  ME  + +KKLE 
Sbjct: 70  FDS--GCERRERVEEGEEEEEVVAVAEAEEERWRVEAEILRAECNFLRMEREVAVKKLEK 127

Query: 356 NRVQTKRTLRSAVETLVSGK 415
           +RV  +  LRSAV+T++SGK
Sbjct: 128 SRVHMESALRSAVQTIISGK 147


>emb|CBI16355.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2   TPKILNIPRRHRRKTTTKQLPRNNNPLSD--IQRSTYRGKLESLFDQERVFSRTSVPIVL 175
           +P+ILN+P RHRR+           P +D  ++RS  R KLE+LF QER FS+T VPIV+
Sbjct: 33  SPRILNLPHRHRRRPPKP-------PAADFLLRRSCRRAKLETLFHQERAFSKT-VPIVV 84

Query: 176 LNSFNDSERTQRRERVXXXXXXXXXXXXXXXXXRL*AEILRAECNFFCMEHNIELKKLEL 355
            +S    ER +R E                   R+ AEILRAECNF  ME  + +KKLE 
Sbjct: 85  FDS--GCERRERVEEGEEEEEVVAVAEAEEERWRVEAEILRAECNFLRMEREVAVKKLEK 142

Query: 356 NRVQTKRTLRSAVETLVSGK 415
           +RV  +  LRSAV+T++SGK
Sbjct: 143 SRVHMESALRSAVQTIISGK 162


>ref|XP_002299902.1| predicted protein [Populus trichocarpa] gi|222847160|gb|EEE84707.1|
           predicted protein [Populus trichocarpa]
          Length = 494

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
 Frame = +2

Query: 2   TPKILNIPRRHRRKTTTKQLPRNNNPLSDIQRSTYRGKLESLFDQERVFSRTSVPIVLLN 181
           TP+IL++PRR RRK    Q+P++N      QR   +GKLE LFDQER F+R ++PI+++ 
Sbjct: 25  TPRILHLPRRPRRK----QVPKSNASKPSSQRDR-KGKLEVLFDQERGFARGAMPILMVG 79

Query: 182 SFNDSE--RTQRRERVXXXXXXXXXXXXXXXXXRL*AEILRAECNFFCMEHNIELKKLEL 355
                +    +RRERV                 R  AE+LRAECN   ME  I +KK+E 
Sbjct: 80  GIRGDQCLEEERRERVEERESVVMEEEKW----RFQAEMLRAECNLLRMEREIAVKKMER 135

Query: 356 NRVQTKRTLRSAVETLVS 409
            RVQ +R LRSAV  L+S
Sbjct: 136 RRVQMERILRSAVRALLS 153


>ref|XP_002513492.1| conserved hypothetical protein [Ricinus communis]
           gi|223547400|gb|EEF48895.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 527

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 58/138 (42%), Positives = 79/138 (57%)
 Frame = +2

Query: 2   TPKILNIPRRHRRKTTTKQLPRNNNPLSDIQRSTYRGKLESLFDQERVFSRTSVPIVLLN 181
           TP+IL++PRR RRK   K      N +    +   +GKLE+LFDQER F+R  +PIV++ 
Sbjct: 25  TPRILHLPRRPRRKPQIKA-----NAVKPSSQRDKKGKLETLFDQEREFARGVLPIVMVT 79

Query: 182 SFNDSERTQRRERVXXXXXXXXXXXXXXXXXRL*AEILRAECNFFCMEHNIELKKLELNR 361
              D  +  RRERV                 R  AE+LRAECN   ME  I +KK+E  R
Sbjct: 80  ---DQCQEGRRERVAERESVVMEEEKW----RFQAEMLRAECNLLRMEREIAVKKMERRR 132

Query: 362 VQTKRTLRSAVETLVSGK 415
            Q ++ L+SAV+TL+SG+
Sbjct: 133 AQVEKALKSAVQTLLSGR 150


Top