BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034958
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containi...   221   4e-56
ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   209   2e-52
ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|2...   209   2e-52
ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat...   208   4e-52
ref|XP_002526186.1| pentatricopeptide repeat-containing protein,...   208   4e-52

>ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
           gi|297738773|emb|CBI28018.3| unnamed protein product
           [Vitis vinifera]
          Length = 695

 Score =  221 bits (564), Expect = 4e-56
 Identities = 101/155 (65%), Positives = 128/155 (82%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           YT+L+L+C+R+NDV+QAKRLQ HM++H Y P D+FLQNRLL LY KSG +S+A +LFDKM
Sbjct: 25  YTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKM 84

Query: 183 TQRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFI 362
           ++RDVFSWNAMLSAYSK G V +L+ VF  M V D+VSYNTVIAGF GNGC     E F+
Sbjct: 85  SRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFV 144

Query: 363 RMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
           RMQ EG ++T+Y+ VSVL+ACS +LD++RGKQ+HG
Sbjct: 145 RMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHG 179



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           +T +++ C +N     A  L   M + +  P D+F  + ++    +   + + + +  K 
Sbjct: 290 WTTMMVGCAQNGKEEDALLLFREMLLENVRP-DNFTISSVVSSCARLASLCQGQAVHGKA 348

Query: 183 T----QRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGF 350
                  D+   +A++  YSK G   +   VF  M  ++ +S+N++I G+  NG      
Sbjct: 349 VIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEAL 408

Query: 351 ELFIRMQREGLQATEYSFVSVLNACSHVLDLRRGK 455
            L+  M  E L+    +FV VL+AC H   + RG+
Sbjct: 409 ALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQ 443



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/76 (34%), Positives = 47/76 (61%)
 Frame = +3

Query: 195 VFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFIRMQR 374
           VF WNA+ + Y+K G +   + +F  M  K+ VS+N++I+G++ NG  ++  +LF  MQ 
Sbjct: 190 VFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQS 249

Query: 375 EGLQATEYSFVSVLNA 422
            GL   + +  ++L+A
Sbjct: 250 SGLMPDQVTISNILSA 265


>ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  209 bits (531), Expect = 2e-52
 Identities = 98/155 (63%), Positives = 119/155 (76%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           YTQL+LEC+R N++ QAKRLQ+HME H + P DSFL N+LL LY K GK+ +A+NLFDKM
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKM 84

Query: 183 TQRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFI 362
            +RD FSWNA+LSAY+K G + NLK  F  MP +DSVSYNT IAGF GN C     ELF 
Sbjct: 85  LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 363 RMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
           RMQREG + TEY+ VS+LNA + +LDLR GKQ+HG
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHG 179



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
 Frame = +3

Query: 39  DVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKMTQRDVFSWNAML 218
           D+   K++   + + ++  N  F+ N L  +Y K G++ +A  LFD +T++++ SWN M+
Sbjct: 170 DLRYGKQIHGSIIVRNFLGN-VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMI 228

Query: 219 SAYSK-----------------------------------MGLVGNLKTVFSSMPVKDSV 293
           S Y+K                                    G V   + VFS    KD V
Sbjct: 229 SGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIV 288

Query: 294 SYNTVIAGFVGNGCFDSGFELFIRMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
            +  ++ G+  NG  +    LF  M  E ++   Y+  SV+++C+ +  L  G+ VHG
Sbjct: 289 CWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           +T +++   +N     A  L N M +    P DS+  + ++    K   +   + +  K 
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEP-DSYTLSSVVSSCAKLASLHHGQAVHGKS 348

Query: 183 T----QRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGF 350
                  ++   +A++  YSK G + + ++VF+ MP ++ VS+N +I G   NG      
Sbjct: 349 ILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDAL 408

Query: 351 ELFIRMQREGLQATEYSFVSVLNACSHVLDLRRGKQ 458
           ELF  M ++  +    +F+ +L+AC H   + +G++
Sbjct: 409 ELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444


>ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|222866452|gb|EEF03583.1|
           predicted protein [Populus trichocarpa]
          Length = 695

 Score =  209 bits (531), Expect = 2e-52
 Identities = 98/155 (63%), Positives = 124/155 (80%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           YT+L LEC R +DV QAKRL++HM +H + PND+F+ NRLL LY KSG++S A  LFD+M
Sbjct: 25  YTRLALECFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEM 84

Query: 183 TQRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFI 362
           TQRD FSWNAMLS Y+K GLV +L+ +F +MP +DSVSYNTVI+GF GNG       +F+
Sbjct: 85  TQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFL 144

Query: 363 RMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
           RMQ+EGL+ TEY+ VSVLNAC+ +LDLRRGKQ+HG
Sbjct: 145 RMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHG 179



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           +T +I+ C +N     A  L + M + +  P D +  + ++    K   +   + +  K 
Sbjct: 290 WTIMIVGCAQNGKEEDALLLFSEMLLENARP-DGYTISSVVSSCAKLASLYHGQVVHGKA 348

Query: 183 ----TQRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGF 350
                  D+   +A++  Y K G+  +  T+FS+M  ++ VS+N++I G+  NG      
Sbjct: 349 FLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEAL 408

Query: 351 ELFIRMQREGLQATEYSFVSVLNACSHVLDLRRGKQ 458
            L+  M  E L+    +FV VL+AC H   +  GK+
Sbjct: 409 SLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKE 444


>ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  208 bits (529), Expect = 4e-52
 Identities = 97/155 (62%), Positives = 119/155 (76%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           YTQL+LEC+R N++ QAKRLQ+HME H + P DSFL N+LL LY K GK+ +A+NLFDKM
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKM 84

Query: 183 TQRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFI 362
            +RD+FSWNA+LSAY+K G + NLK  F  MP +DSVSYNT IAGF GN C     ELF 
Sbjct: 85  LKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 363 RMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
           RMQREG + TEY+ VS+LNA + + DLR GKQ+HG
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHG 179



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 35/179 (19%)
 Frame = +3

Query: 36  NDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKMTQRDVFSWNAM 215
           +D+   K++   + + ++  N  F+ N L  +Y K G++ +A  LFD +T++++ SWN M
Sbjct: 169 SDLRYGKQIHGSIIVRNFLGN-VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLM 227

Query: 216 LSAYSK-----------------------------------MGLVGNLKTVFSSMPVKDS 290
           +S Y+K                                    G V   + VFS    KD 
Sbjct: 228 ISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDI 287

Query: 291 VSYNTVIAGFVGNGCFDSGFELFIRMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
           V +  ++ G+  NG  +    LF  M  E ++   Y+  SV+++C+ +  L  G+ VHG
Sbjct: 288 VCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           +T +++   +N     A  L N M +    P DS+  + ++    K   +   + +  K 
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEP-DSYTLSSVVSSCAKLASLHHGQAVHGKS 348

Query: 183 T----QRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGF 350
                  ++   +A++  YSK G + + ++VF+ MP ++ VS+N +I G   NG      
Sbjct: 349 ILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDAL 408

Query: 351 ELFIRMQREGLQATEYSFVSVLNACSHVLDLRRGKQ 458
           ELF  M ++  +    +F+ +L+AC H   + +G++
Sbjct: 409 ELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444


>ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534490|gb|EEF36190.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 446

 Score =  208 bits (529), Expect = 4e-52
 Identities = 100/155 (64%), Positives = 118/155 (76%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           YT+L LEC R NDV QAKRL+ HM+ H Y P+DSFLQNRLL LY K GK+S A  LFDKM
Sbjct: 26  YTRLALECFRANDVDQAKRLETHMDFHLYQPSDSFLQNRLLHLYAKLGKISHARYLFDKM 85

Query: 183 TQRDVFSWNAMLSAYSKMGLVGNLKTVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFI 362
           + RD+FSWNAMLS Y+K GLV +L+ VF  MP +DSVSYNTVI GF  NG      E F+
Sbjct: 86  SYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVSYNTVITGFAKNGRAGKAVEAFV 145

Query: 363 RMQREGLQATEYSFVSVLNACSHVLDLRRGKQVHG 467
           RMQ EG + TEY+ VSVLNAC+ +LDLR+GKQ+HG
Sbjct: 146 RMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHG 180



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
 Frame = +3

Query: 3   YTQLILECIRNNDVIQAKRLQNHMEIHSYTPNDSFLQNRLLQLYGKSGKVSEAENLFDKM 182
           +  ++  C +  D+ + K++   +   +Y   + F+ N L  +Y K  ++ +A  LFD++
Sbjct: 159 HVSVLNACTQLLDLRKGKQIHGRILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRL 218

Query: 183 TQRDVFSWNAMLS-----------------------------------AYSKMGLVGNLK 257
             +++ SWN+M+S                                   AY + G +    
Sbjct: 219 ANKNMVSWNSMISGYLKNGQFEIGINLFHEMQGLGLKPDQVTVSNVLCAYFQSGYIDGAT 278

Query: 258 TVFSSMPVKDSVSYNTVIAGFVGNGCFDSGFELFIRMQREGLQATEYSFVSVLNACSHVL 437
            +FS    KD V + T+I G+  NG  ++   LF  M  E ++   Y+  SV+++C+ + 
Sbjct: 279 KLFSETREKDKVCWTTMIVGYTQNGKEENALMLFNEM-LENVRPDSYTISSVVSSCAKLA 337

Query: 438 DLRRGKQVHG 467
            L  G+ +HG
Sbjct: 338 SLIHGQVIHG 347