BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034919
         (251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11
emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]    74   2e-11
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...    71   1e-10
ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis th...    70   1e-10
ref|XP_002885286.1| pentatricopeptide repeat-containing protein ...    67   1e-09

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
           [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
           protein product [Vitis vinifera]
          Length = 471

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/71 (53%), Positives = 50/71 (70%)
 Frame = +1

Query: 31  RVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKKGV 210
           R+LK G+  +V+V TT IHFY ++ D   AR +FDEM  +R+S TWNAMI+GYCSQ+  V
Sbjct: 131 RILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMR-KRSSVTWNAMITGYCSQRGKV 189

Query: 211 EYFAHAALKLF 243
             +A  AL LF
Sbjct: 190 VCYARDALVLF 200


>emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]
          Length = 437

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/71 (53%), Positives = 50/71 (70%)
 Frame = +1

Query: 31  RVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKKGV 210
           R+LK G+  +V+V TT IHFY ++ D   AR +FDEM  +R+S TWNAMI+GYCSQ+  V
Sbjct: 131 RILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMR-KRSSVTWNAMITGYCSQRGKV 189

Query: 211 EYFAHAALKLF 243
             +A  AL LF
Sbjct: 190 VCYARDALVLF 200


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 477

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 37/71 (52%), Positives = 52/71 (73%)
 Frame = +1

Query: 31  RVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKKGV 210
           R++K G   +++V TT I+FY S+ D  SAR++FDEM  RR++ TWNAMI+GY SQK+G 
Sbjct: 133 RIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEM-PRRSTVTWNAMITGYSSQKEGN 191

Query: 211 EYFAHAALKLF 243
           + +A  AL LF
Sbjct: 192 KKYALNALSLF 202


>ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
           gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g18970 gi|9280314|dbj|BAB01693.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis
           thaliana] gi|332642654|gb|AEE76175.1| mitochondrial
           editing factor 20 [Arabidopsis thaliana]
          Length = 472

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = +1

Query: 34  VLKIGLGYDV-VVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKKGV 210
           V K+G  Y+  ++GTT +HFY  +GD   ARK+FDEM + RTS TWNAMI GYCS K   
Sbjct: 137 VKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPE-RTSVTWNAMIGGYCSHKDKG 195

Query: 211 EYFAHAALKLF 243
            + A  A+ LF
Sbjct: 196 NHNARKAMVLF 206


>ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331126|gb|EFH61545.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 471

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +1

Query: 34  VLKIGLGYDV-VVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKKGV 210
           V K+G  Y+  ++GTT +H Y  +GD   ARK+FDEM +R TS TWNAMI GYCS K   
Sbjct: 136 VKKLGFLYESELIGTTLLHCYAKNGDLRYARKVFDEMPER-TSVTWNAMIGGYCSHKDKG 194

Query: 211 EYFAHAALKLF 243
            + A  A+ LF
Sbjct: 195 NHNARKAMILF 205