BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034887
         (1326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   367   4e-99
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   364   2e-98
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   337   3e-90
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   337   3e-90
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   291   3e-76

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  367 bits (942), Expect = 4e-99
 Identities = 175/282 (62%), Positives = 214/282 (75%), Gaps = 1/282 (0%)
 Frame = +3

Query: 6    LVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALMIFDKVGEKD 185
            LV AAAE+G L+ GRWIHGW+ R  +KIDAFL SA +DMY KCGSI++A M+F +V EKD
Sbjct: 368  LVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKD 427

Query: 186  VAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNS 365
            V VWT MI G AFHG+G  AL+LF EMQ+   PN+VTF+A+LTACSH G + QGL+IFNS
Sbjct: 428  VTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNS 487

Query: 366  MID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKTNGNVE 542
            M + YGIEPGVEHYGCLVDLL R+GR SE K +IE MPM PS SIWG +L+  +  GN+E
Sbjct: 488  MKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIE 547

Query: 543  LAETAXXXXXXXXXXXXGGYVLLSNAYAACGRWSYSHKIRELMESRGLKKIAGCSNLVVD 722
            +AE A            GGYVLLSN YA  GRW +S KIRE+MESRG+KK AGCS++VVD
Sbjct: 548  IAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVD 607

Query: 723  GDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANVVSDFVE 848
            G IHEF+AADKRHPRW+E+  IL  L  EMKLG + + ++++
Sbjct: 608  GIIHEFVAADKRHPRWIEIQSILFCLKSEMKLGTDFLLEYLQ 649


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
            predicted protein [Populus trichocarpa]
          Length = 580

 Score =  364 bits (935), Expect = 2e-98
 Identities = 172/276 (62%), Positives = 213/276 (77%)
 Frame = +3

Query: 3    TLVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALMIFDKVGEK 182
            +LV AA E G L QGRW HGW+ R  IK+DAFL SAL+DMYCKCGSIE+A  +F ++ +K
Sbjct: 303  SLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKK 362

Query: 183  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFN 362
            DV VWT MI GLAFHG+G  AL+LF EMQ+   P+ VTF+++L+ACSH G++DQG+K+F+
Sbjct: 363  DVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFS 422

Query: 363  SMIDYGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKTNGNVE 542
            SM DYGIEPGVEHYGCLVDLLAR+GR+SEAK II++MPM PS SIWG +LN  +  G+VE
Sbjct: 423  SMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVE 482

Query: 543  LAETAXXXXXXXXXXXXGGYVLLSNAYAACGRWSYSHKIRELMESRGLKKIAGCSNLVVD 722
            LAE A            GGY LLSN YAA GRWSYS KIRE MESRG+KK AGCS++VVD
Sbjct: 483  LAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVD 542

Query: 723  GDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANV 830
            G +H F++ADK HP W+++  IL+ L  EMK GA++
Sbjct: 543  GVVHNFISADKCHPGWVDISSILNCLKNEMKPGADL 578



 Score = 68.9 bits (167), Expect = 3e-09
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
 Frame = +3

Query: 6   LVCAAAEVGVLYQGRWIHGWLARAH--IKIDAFLASALVDMYCKCGSIEKALMIFDKVGE 179
           L+ +  ++G +  G+ +HGW+ R    I  +  L +AL+DMY KC  +E AL  F  + E
Sbjct: 170 LLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKE 229

Query: 180 KDVAVWTAMIAGLAFHGHGLHALKLFQEM--QDISR------------------------ 281
           KD+  W  ++AG A  G    A   F +M  +DI                          
Sbjct: 230 KDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDM 289

Query: 282 ------PNRVTFIAILTACSHGGMIDQGLKIFNSMIDYGIEPGVEHYGCLVDLLARAGRV 443
                 P+ VT I++++A +  G +DQG      +I   I+        L+D+  + G +
Sbjct: 290 VMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSI 349

Query: 444 SEAKSIIEKMPMNPSGSIWGTLL 512
             A  + +++      ++W T++
Sbjct: 350 ERASRVFKEI-NKKDVTVWTTMI 371


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  337 bits (865), Expect = 3e-90
 Identities = 162/278 (58%), Positives = 206/278 (74%), Gaps = 1/278 (0%)
 Frame = +3

Query: 6    LVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALMIFDKVGEKD 185
            L+ A AE+G L QGRWIHG   +   KI+AF  SAL+DMYCKCGSIE+A +IF+++ EKD
Sbjct: 302  LISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKD 361

Query: 186  VAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNS 365
            V  WT MI G AFHG G  AL+LF  MQ  ++PN VTF+++L ACSH G++D+GLKIF+S
Sbjct: 362  VTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSS 421

Query: 366  MID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKTNGNVE 542
            M   Y IEPGVEHYGCLVDLL R+GR+ +A  +IEKMPM PS SIWG +L+  + + N+E
Sbjct: 422  MKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNME 481

Query: 543  LAETAXXXXXXXXXXXXGGYVLLSNAYAACGRWSYSHKIRELMESRGLKKIAGCSNLVVD 722
            LAE A            GGY+LLSN YA CGRWSYS  IRE+M SRG+KKIAGCS++ VD
Sbjct: 482  LAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 541

Query: 723  GDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANVVS 836
            G +H+F A++K+HPRW+++  ILS L  EM+L A+V S
Sbjct: 542  GMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 579


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  337 bits (865), Expect = 3e-90
 Identities = 162/278 (58%), Positives = 206/278 (74%), Gaps = 1/278 (0%)
 Frame = +3

Query: 6    LVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALMIFDKVGEKD 185
            L+ A AE+G L QGRWIHG   +   KI+AF  SAL+DMYCKCGSIE+A +IF+++ EKD
Sbjct: 367  LISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKD 426

Query: 186  VAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNS 365
            V  WT MI G AFHG G  AL+LF  MQ  ++PN VTF+++L ACSH G++D+GLKIF+S
Sbjct: 427  VTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSS 486

Query: 366  MID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKTNGNVE 542
            M   Y IEPGVEHYGCLVDLL R+GR+ +A  +IEKMPM PS SIWG +L+  + + N+E
Sbjct: 487  MKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNME 546

Query: 543  LAETAXXXXXXXXXXXXGGYVLLSNAYAACGRWSYSHKIRELMESRGLKKIAGCSNLVVD 722
            LAE A            GGY+LLSN YA CGRWSYS  IRE+M SRG+KKIAGCS++ VD
Sbjct: 547  LAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 606

Query: 723  GDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANVVS 836
            G +H+F A++K+HPRW+++  ILS L  EM+L A+V S
Sbjct: 607  GMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 644


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g04750, mitochondrial; Flags: Precursor
            gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein
            [Arabidopsis thaliana] gi|332640610|gb|AEE74131.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 661

 Score =  291 bits (744), Expect = 3e-76
 Identities = 149/275 (54%), Positives = 190/275 (69%), Gaps = 4/275 (1%)
 Frame = +3

Query: 3    TLVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALMIFDKVGEK 182
            +L+  AA  G L  GRW+HG + R  +K DAFL+SAL+DMYCKCG IE+A M+F    EK
Sbjct: 373  SLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEK 432

Query: 183  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDIS-RPNRVTFIAILTACSHGGMIDQGLKIF 359
            DVA+WT+MI GLAFHG+G  AL+LF  MQ+    PN VT +A+LTACSH G++++GL +F
Sbjct: 433  DVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVF 492

Query: 360  NSMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIE-KMPMNPSGSIWGTLLNVGKTNG 533
            N M D +G +P  EHYG LVDLL RAGRV EAK I++ KMPM PS S+WG++L+  +   
Sbjct: 493  NHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGE 552

Query: 534  NVELAETAXXXXXXXXXXXXGGYVLLSNAYAACGRWSYSHKIRELMESRGLKKIAGCSNL 713
            ++E AE A            GGYVLLSN YA  GRW YS K RE ME+RG+KK AG S++
Sbjct: 553  DIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612

Query: 714  VVDGDIHEFMAADKR-HPRWLEVYFILSVLNKEMK 815
            V    +H F+AA+K+ HPRW E+  IL  L  EMK
Sbjct: 613  VGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647