BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034835
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   160   1e-37
ref|XP_002531291.1| pentatricopeptide repeat-containing protein,...   156   2e-36
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   145   3e-33

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  160 bits (404), Expect = 1e-37
 Identities = 78/130 (60%), Positives = 98/130 (75%)
 Frame = -2

Query: 392 LMSCGRLSDKRLGKSIHAWIARRELYCARNLILLNALLDMYVKYEELELAQRIFGTLREK 213
           L+ CGRL D +LGKS+HAWI RR L  + NLIL NALLDMYVK +EL +AQ IF  +  K
Sbjct: 235 LICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRK 294

Query: 212 DVISWNTIISGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMI 33
           D ISWNT+I+GYAK+G+LE A + F +MP +DLVSWNS+IAGYAQ+ +   V  LF+ M+
Sbjct: 295 DTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMV 354

Query: 32  GENVKPDKVT 3
            EN+ PD VT
Sbjct: 355 AENIWPDFVT 364


>ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529124|gb|EEF31104.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  156 bits (394), Expect = 2e-36
 Identities = 77/130 (59%), Positives = 96/130 (73%)
 Frame = -2

Query: 392 LMSCGRLSDKRLGKSIHAWIARRELYCARNLILLNALLDMYVKYEELELAQRIFGTLREK 213
           L+SCG+L + R GK++HAWI RR+   + NLIL NALLDMYVK +EL+LA R F  L EK
Sbjct: 233 LVSCGKLGEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHRTFSALTEK 292

Query: 212 DVISWNTIISGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMI 33
           DV+SWNTII+G AK GDLE A +LF++MP +D VSWNSLIA YA R ++  V DL   M+
Sbjct: 293 DVVSWNTIIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANRGDFIIVRDLLYDMV 352

Query: 32  GENVKPDKVT 3
            ENV P+  T
Sbjct: 353 AENVVPNNTT 362


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  150 bits (379), Expect = 1e-34
 Identities = 75/130 (57%), Positives = 97/130 (74%)
 Frame = -2

Query: 392 LMSCGRLSDKRLGKSIHAWIARRELYCARNLILLNALLDMYVKYEELELAQRIFGTLREK 213
           L+ CG+L + +LGKS+HA I +     + NLIL NALLDMYVK  EL+LA+++F    EK
Sbjct: 171 LLLCGQLGETKLGKSVHAQIEKS--IGSSNLILYNALLDMYVKCNELKLARKVFDGPMEK 228

Query: 212 DVISWNTIISGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMI 33
           D +SWNTII+GYAK+G+LE A  LFN++P +D+VSWNSLI+GYAQ  ++  V  LF  M 
Sbjct: 229 DTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMF 288

Query: 32  GENVKPDKVT 3
            ENVKPDKVT
Sbjct: 289 AENVKPDKVT 298


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  150 bits (379), Expect = 1e-34
 Identities = 75/130 (57%), Positives = 97/130 (74%)
 Frame = -2

Query: 392 LMSCGRLSDKRLGKSIHAWIARRELYCARNLILLNALLDMYVKYEELELAQRIFGTLREK 213
           L+ CG+L + +LGKS+HA I +     + NLIL NALLDMYVK  EL+LA+++F    EK
Sbjct: 236 LLLCGQLGETKLGKSVHAQIEKS--IGSSNLILYNALLDMYVKCNELKLARKVFDGPMEK 293

Query: 212 DVISWNTIISGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMI 33
           D +SWNTII+GYAK+G+LE A  LFN++P +D+VSWNSLI+GYAQ  ++  V  LF  M 
Sbjct: 294 DTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMF 353

Query: 32  GENVKPDKVT 3
            ENVKPDKVT
Sbjct: 354 AENVKPDKVT 363


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score =  145 bits (367), Expect = 3e-33
 Identities = 68/130 (52%), Positives = 97/130 (74%)
 Frame = -2

Query: 392 LMSCGRLSDKRLGKSIHAWIARRELYCARNLILLNALLDMYVKYEELELAQRIFGTLREK 213
           L+SCG+L + + GK++H W+ RR+   + NLIL NALLDMYVK +++ELA R FG L+EK
Sbjct: 171 LVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEK 230

Query: 212 DVISWNTIISGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMI 33
           D++SWN I++G AK+G+LE A   F +MP +D+VSWNSL+ GYA R ++++V +L   M+
Sbjct: 231 DIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMV 290

Query: 32  GENVKPDKVT 3
            E V PD VT
Sbjct: 291 MEKVIPDTVT 300



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
 Frame = -2

Query: 356 GKSIHAWIARRELYCARNLILLNALLDMYVKYEELELAQRIFGTLREKDVISWNTIISGY 177
           G+  H W+ R ++    +  L +AL+DMY K   +E A R+F  + +KDV  W T+I+G 
Sbjct: 317 GRWAHGWVIRMQIKL--DAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGL 374

Query: 176 AKIGDLESASSLFNEMPK---KDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVKP 15
           A  G    A  LF+EM +    D V++ S+++  +        + +F  M    ++P
Sbjct: 375 AFHGYGSKALELFSEMQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEP 431