BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034829
         (539 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   163   1e-38
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   159   3e-37
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   150   9e-35
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   150   2e-34
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  163 bits (413), Expect = 1e-38
 Identities = 81/181 (44%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           +  N+WS EL+ +LE S S  LT+ETV +VLK+L+K P+KA DFFNWVC +NGFKPS P+
Sbjct: 70  LSVNDWSPELETQLENS-SPLLTHETVIYVLKKLDKDPHKAWDFFNWVCDRNGFKPSSPL 128

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           Y+LMLRIL  +++MK FW  + KM   G Y D+ETY T++  F++ ++  D V     + 
Sbjct: 129 YSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDSDAVAFKHFFD 188

Query: 361 EM--RISLDAIVKGVVDVVLGSDWNDDVKKKLGKMNVQLSENVLLEIFTALRGQPFKALF 534
            M    ++D++VK VV VV  ++W+++V+K+L  M + L++N ++ +   LR  P KAL 
Sbjct: 189 RMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNYPLKALQ 248

Query: 535 F 537
           F
Sbjct: 249 F 249



 Score = 81.3 bits (199), Expect = 9e-14
 Identities = 45/121 (37%), Positives = 67/121 (55%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           V   EWS E+++ELE  +   LT   V  VLK+L  +P KAL FFNW      ++ +   
Sbjct: 207 VSATEWSNEVEKELE-GMGILLTDNFVIRVLKELRNYPLKALQFFNWAGKCERYECNTIT 265

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           YN + R+LG ++++ EFW  V +M   G  +D +TY  +   F++ KL  D V L E  M
Sbjct: 266 YNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEFMM 325

Query: 361 E 363
           +
Sbjct: 326 D 326


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  159 bits (402), Expect = 3e-37
 Identities = 84/178 (47%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
 Frame = +1

Query: 10  NEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPVYNL 189
           N+WS EL+ ELEKS S+ LT+ETV +VLK+L+K P +  +FFNWV  KNGF+PS  +Y+L
Sbjct: 75  NDWSDELESELEKS-SSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPSSAMYSL 133

Query: 190 MLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAY--ME 363
           +LR L   E+MK+FW  + KM   G  IDKETY T++  FK+ K+  + V L   Y  M 
Sbjct: 134 ILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMV 193

Query: 364 MRISLDAIVKGVVDVVLGSDWNDDVKKKLGKMNVQLSENVLLEIFTALRGQPFKALFF 537
              ++D +VK VV++V  S W+ +V+KKLG++    S+N +L +   LRG P KAL F
Sbjct: 194 QENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRF 251



 Score = 75.5 bits (184), Expect = 5e-12
 Identities = 41/121 (33%), Positives = 68/121 (56%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           V  + WS E++++L + L    +   V  VL++L  +P KAL FF WV    G++ S   
Sbjct: 209 VTMSVWSSEVEKKLGE-LKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSIT 267

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           YN++ R+LG ++++ EFW  V +M   G  +D +TY  +   F++ K+  D V L E  M
Sbjct: 268 YNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYEIMM 327

Query: 361 E 363
           +
Sbjct: 328 D 328


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  150 bits (380), Expect = 9e-35
 Identities = 78/181 (43%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           V TN+WS+ L+ ELE +L+  LT+ETV +VLK+L+K P KA +FFNW   KNG   S  +
Sbjct: 65  VSTNDWSEMLETELE-TLNPTLTHETVVYVLKRLDKQPQKASEFFNWASGKNGSTQSSSI 123

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           Y+++LRI    E+MK FW  +  M   G Y+D+ETY T++   +++K   D   L   Y 
Sbjct: 124 YSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADATGLTHFYN 183

Query: 361 EM--RISLDAIVKGVVDVVLGSDWNDDVKKKLGKMNVQLSENVLLEIFTALRGQPFKALF 534
            M  + ++D++V+ VVD+VLGSDW++DV  KL ++ + LS+N ++ +   LR  P KAL 
Sbjct: 184 RMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPLKALS 243

Query: 535 F 537
           F
Sbjct: 244 F 244



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 37/118 (31%), Positives = 66/118 (55%)
 Frame = +1

Query: 10  NEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPVYNL 189
           ++WS ++  +LE+ L   L+   V  VLK+L   P KAL FF+WV  +  +  +   YN 
Sbjct: 205 SDWSNDVPGKLEE-LGIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNTVSYNA 263

Query: 190 MLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYME 363
           + R+LG +++++ FW  + +M      ID +TY  +   F+++K+  + V L E  M+
Sbjct: 264 IARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAVKLYELMMD 321


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  150 bits (378), Expect = 2e-34
 Identities = 74/179 (41%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
 Frame = +1

Query: 7   TNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPVYN 186
           TN+WSQ L+ +LE    + + +ETV +V+K+L+K+P KA  FFNWVC K  F+PS  VY+
Sbjct: 73  TNDWSQALELKLENRFPS-MPHETVLYVIKRLDKNPEKASCFFNWVCKKVWFRPSCSVYS 131

Query: 187 LMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYMEM 366
           L++RIL  ++TMK+FW  +  M  +G ++D+ETY T+ V FK+ K+  D+V L   Y  M
Sbjct: 132 LIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMDSDSVALTHFYNRM 191

Query: 367 --RISLDAIVKGVVDVVLGSDWNDDVKKKLGKMNVQLSENVLLEIFTALRGQPFKALFF 537
               ++ ++V  VV ++  S+W D+V  +L K+ +QLS+N ++ +   LR  P KA  F
Sbjct: 192 LEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPLKAYKF 250



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 41/121 (33%), Positives = 67/121 (55%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           +  +EW  E+  EL K L  +L+   V  VLK+L K P KA  FF+WV  ++G++     
Sbjct: 208 ISRSEWGDEVVGELAK-LEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVT 266

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           YN + R+L   E+++EFW  + +M R G  +D +TY  +    ++ ++  D V L E  M
Sbjct: 267 YNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRNRMMEDAVKLYELMM 326

Query: 361 E 363
           +
Sbjct: 327 D 327


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  142 bits (358), Expect = 3e-32
 Identities = 70/181 (38%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           V T++WS+ L++ELEK   + +T+ETV +VLK++E +P KA  FFNWV  K  ++PS  +
Sbjct: 75  VLTSDWSKGLEQELEKCYPS-MTHETVVYVLKRMEANPEKAWCFFNWVSAKEWYRPSSSL 133

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           Y L+LR+L  EET+K FW  +  M   G Y D+E Y+ ++  FK+  + +D V+L   Y 
Sbjct: 134 YGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMYFPILAGFKRKNMNKDRVSLTRFYS 193

Query: 361 E--MRISLDAIVKGVVDVVLGSDWNDDVKKKLGKMNVQLSENVLLEIFTALRGQPFKALF 534
           +     ++  +V  VVD++ GS+W D+V   L K+ +++S+N +  +   LR  P KA  
Sbjct: 194 QGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEIRMSDNFVTRVLKELRNCPLKAYE 253

Query: 535 F 537
           F
Sbjct: 254 F 254



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/121 (30%), Positives = 65/121 (53%)
 Frame = +1

Query: 1   VETNEWSQELKRELEKSLSTKLTYETVCFVLKQLEKHPYKALDFFNWVCVKNGFKPSLPV 180
           +  +EW  E+   L K L  +++   V  VLK+L   P KA +FFNWV  ++G++     
Sbjct: 212 ISGSEWGDEVMSNLAK-LEIRMSDNFVTRVLKELRNCPLKAYEFFNWVGKQSGYEHDTVT 270

Query: 181 YNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYWTLIVDFKQAKLTRDTVTLNEAYM 360
           YN + R+L   +++++FW  + +M   G  +D +TY  +    ++ K+  D V L E  M
Sbjct: 271 YNAIARVLASTDSIEKFWSVIEEMKSVGHELDIDTYIKISKKLQKNKMMEDAVKLYELTM 330

Query: 361 E 363
           +
Sbjct: 331 D 331