BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034822
         (432 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32639.3| unnamed protein product [Vitis vinifera]              182   3e-44
ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi...   182   3e-44
ref|XP_003594404.1| Pentatricopeptide repeat-containing protein ...   179   3e-43
ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|2...   176   2e-42
ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containi...   172   2e-41

>emb|CBI32639.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  182 bits (461), Expect = 3e-44
 Identities = 91/145 (62%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
 Frame = +3

Query: 3   LSNALLDMYAKCGKGVTACLLFDRIRHKTVVSWTSIIGAYGSQGCGIEAYELFKVMESSG 182
           L N LLDMYAKCGK + A  LFDR+  K VVSWTS+I AYG+ G G+EA +LFK ME  G
Sbjct: 235 LCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEG 294

Query: 183 VS--PNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPDSEHYACFIDLLGRAGLVD 356
            S  PN VTFLAVLSAC HSG+VEQG+ECF  ++K Y +DP  EHYACFID+LGRAG ++
Sbjct: 295 NSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQIE 354

Query: 357 EVWDLFYDMSKRGTRPTGAVLASLV 431
           EVW LF +M K  T+PT AV A+++
Sbjct: 355 EVWRLFNNMIKNQTKPTAAVWAAIL 379


>ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score =  182 bits (461), Expect = 3e-44
 Identities = 91/145 (62%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
 Frame = +3

Query: 3   LSNALLDMYAKCGKGVTACLLFDRIRHKTVVSWTSIIGAYGSQGCGIEAYELFKVMESSG 182
           L N LLDMYAKCGK + A  LFDR+  K VVSWTS+I AYG+ G G+EA +LFK ME  G
Sbjct: 274 LCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEG 333

Query: 183 VS--PNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPDSEHYACFIDLLGRAGLVD 356
            S  PN VTFLAVLSAC HSG+VEQG+ECF  ++K Y +DP  EHYACFID+LGRAG ++
Sbjct: 334 NSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQIE 393

Query: 357 EVWDLFYDMSKRGTRPTGAVLASLV 431
           EVW LF +M K  T+PT AV A+++
Sbjct: 394 EVWRLFNNMIKNQTKPTAAVWAAIL 418


>ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355483452|gb|AES64655.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 516

 Score =  179 bits (453), Expect = 3e-43
 Identities = 89/145 (61%), Positives = 108/145 (74%), Gaps = 2/145 (1%)
 Frame = +3

Query: 3   LSNALLDMYAKCGKGVTACLLFDRIRHKTVVSWTSIIGAYGSQGCGIEAYELF-KVMES- 176
           L N LLDMYAKCGK + A  +FD I  K V+SWT +I  YG  GCG EA ELF K+ME  
Sbjct: 292 LCNVLLDMYAKCGKILQAWSVFDGIFQKDVISWTCMIDGYGRNGCGYEAVELFWKMMEDG 351

Query: 177 SGVSPNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPDSEHYACFIDLLGRAGLVD 356
           S V PNSVTFL+VLSACGHSGLVE+G++CF  M++ YGIDP+ EHYACFID+LGRAG ++
Sbjct: 352 SEVLPNSVTFLSVLSACGHSGLVEEGKQCFNIMKEKYGIDPEPEHYACFIDILGRAGKIE 411

Query: 357 EVWDLFYDMSKRGTRPTGAVLASLV 431
           EVW  + +M  +GT PT  V  SL+
Sbjct: 412 EVWSAYQNMIDQGTSPTAGVWISLL 436


>ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score =  176 bits (445), Expect = 2e-42
 Identities = 88/143 (61%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
 Frame = +3

Query: 9   NALLDMYAKCGKGVTACLLFDRIRHKTVVSWTSIIGAYGSQGCGIEAYELFKVM--ESSG 182
           N LLDMYAKCG+ + +  +FD I HKTVVSWTS+I AYG  G G EA +LFK M  E S 
Sbjct: 328 NVLLDMYAKCGRILKSRSIFDGICHKTVVSWTSMIDAYGRHGHGDEALKLFKEMGQEGSR 387

Query: 183 VSPNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPDSEHYACFIDLLGRAGLVDEV 362
           V PNS+T LAVLSACGHSGLV++G+E F S R+ YG+DP  EHY+C ID+LGRAG +++ 
Sbjct: 388 VLPNSLTLLAVLSACGHSGLVKEGQELFNSAREKYGLDPSQEHYSCVIDILGRAGQIEDA 447

Query: 363 WDLFYDMSKRGTRPTGAVLASLV 431
           W LF+DM K+G  PT AV A+LV
Sbjct: 448 WCLFHDMVKKGIGPTAAVWAALV 470


>ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Glycine max]
          Length = 547

 Score =  172 bits (437), Expect = 2e-41
 Identities = 84/145 (57%), Positives = 106/145 (73%), Gaps = 2/145 (1%)
 Frame = +3

Query: 3   LSNALLDMYAKCGKGVTACLLFDRIRHKTVVSWTSIIGAYGSQGCGIEAYELFKVMESSG 182
           L NALLDMYAKCG+   A  +FD I  K V+SWT +I AYG  G G EA E+F+ M   G
Sbjct: 322 LCNALLDMYAKCGRISQALSVFDGICEKDVISWTCMIDAYGRNGQGREAVEVFREMREVG 381

Query: 183 --VSPNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPDSEHYACFIDLLGRAGLVD 356
             V PNSVTFL+VLSACGHSGLVE+G+ CF  +R+ YG+ PD EHYAC+ID+LGRAG ++
Sbjct: 382 SKVLPNSVTFLSVLSACGHSGLVEEGKNCFKLLREKYGLQPDPEHYACYIDILGRAGNIE 441

Query: 357 EVWDLFYDMSKRGTRPTGAVLASLV 431
           EVW  +++M  +GTRPT  V  +L+
Sbjct: 442 EVWSAYHNMVVQGTRPTAGVWVALL 466



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
 Frame = +3

Query: 12  ALLDMYAKCGKGVTACLLFDRIRHKTVVSWTSIIGAYGSQGCGIEAYELFKVMESSGVSP 191
           ALLDMY+KCG    A  +FD +RH+ VV+W +++  +      +EA+ + + M    V  
Sbjct: 127 ALLDMYSKCGSLDEATKVFDEMRHRDVVAWNALLSCFLRCDRPVEAFGVLREMGRENVEL 186

Query: 192 NSVTFLAVLSACGHSGLVEQGRE---CFISMRKNYGIDPDSEHYACFIDLLGRAGLVDEV 362
           +  T  + L +C     +E GR+     + M ++  +          +D     G VD+ 
Sbjct: 187 SEFTLCSALKSCASLKALELGRQVHGLVVCMGRDLVV-----LSTALVDFYTSVGCVDDA 241

Query: 363 WDLFYDM 383
             +FY +
Sbjct: 242 LKVFYSL 248