BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034746
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containi...   127   7e-28
emb|CBI19924.3| unnamed protein product [Vitis vinifera]              127   7e-28
ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containi...   127   7e-28
ref|XP_002530092.1| pentatricopeptide repeat-containing protein,...   123   1e-26
ref|NP_189286.1| pentatricopeptide repeat-containing protein [Ar...   113   1e-23

>ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
           gi|449521874|ref|XP_004167954.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
          Length = 697

 Score =  127 bits (320), Expect = 7e-28
 Identities = 61/97 (62%), Positives = 77/97 (79%)
 Frame = -1

Query: 293 IYARLFQQCSSERAVIEARILESHLVTYNPRRPVFLINRAIETYGKCGCLKDARGLFDDM 114
           +Y RLFQ CSS RA++EAR +ESHL T+ P  P+FL+NRAIE YGKCGCLKDAR LFD+M
Sbjct: 61  LYTRLFQLCSSTRALVEARKVESHLATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDEM 120

Query: 113 RQRHLFDGGTWNAMITAYSQNGDGENALLVFWEMHRS 3
            QR   DGG+WNAMITAY+QNG    AL ++ ++++S
Sbjct: 121 PQR---DGGSWNAMITAYTQNGYALEALNLYLDLNKS 154



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/94 (29%), Positives = 53/94 (56%)
 Frame = -1

Query: 287 ARLFQQCSSERAVIEARILESHLVTYNPRRPVFLINRAIETYGKCGCLKDARGLFDDMRQ 108
           A + + C S  A+  +R +  H+V       V L +  ++ YGKC  + DAR +FD+++ 
Sbjct: 164 ASILRSCGSVLALHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQN 223

Query: 107 RHLFDGGTWNAMITAYSQNGDGENALLVFWEMHR 6
           R   +  +WN ++  Y + G+G+ A+ +F++M R
Sbjct: 224 R---NDVSWNVIVRRYLEVGNGKEAVSMFFQMFR 254


>emb|CBI19924.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  127 bits (320), Expect = 7e-28
 Identities = 61/96 (63%), Positives = 76/96 (79%)
 Frame = -1

Query: 293 IYARLFQQCSSERAVIEARILESHLVTYNPRRPVFLINRAIETYGKCGCLKDARGLFDDM 114
           +YARLFQ CSS  A++EAR +ESHL+T++P  P+FL+NRAIETYGKC CL DAR LF++M
Sbjct: 62  LYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEM 121

Query: 113 RQRHLFDGGTWNAMITAYSQNGDGENALLVFWEMHR 6
            QR   DGG+WNAMITAY+Q G  E AL +F  M+R
Sbjct: 122 PQR---DGGSWNAMITAYAQGGCAEKALWLFSRMNR 154


>ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
           [Vitis vinifera]
          Length = 711

 Score =  127 bits (320), Expect = 7e-28
 Identities = 61/96 (63%), Positives = 76/96 (79%)
 Frame = -1

Query: 293 IYARLFQQCSSERAVIEARILESHLVTYNPRRPVFLINRAIETYGKCGCLKDARGLFDDM 114
           +YARLFQ CSS  A++EAR +ESHL+T++P  P+FL+NRAIETYGKC CL DAR LF++M
Sbjct: 62  LYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEM 121

Query: 113 RQRHLFDGGTWNAMITAYSQNGDGENALLVFWEMHR 6
            QR   DGG+WNAMITAY+Q G  E AL +F  M+R
Sbjct: 122 PQR---DGGSWNAMITAYAQGGCAEKALWLFSRMNR 154


>ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530403|gb|EEF32291.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 718

 Score =  123 bits (309), Expect = 1e-26
 Identities = 59/96 (61%), Positives = 76/96 (79%)
 Frame = -1

Query: 293 IYARLFQQCSSERAVIEARILESHLVTYNPRRPVFLINRAIETYGKCGCLKDARGLFDDM 114
           +YA LFQ CSS  +++EAR +ESHL+T+NP  P+FL+NRAIETYGKC CLKDAR LFD+M
Sbjct: 59  LYASLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRAIETYGKCECLKDARELFDEM 118

Query: 113 RQRHLFDGGTWNAMITAYSQNGDGENALLVFWEMHR 6
            QR   DGG+WNA+I AY+Q G  E AL +F +M++
Sbjct: 119 PQR---DGGSWNAIIKAYTQCGYAEKALGLFKDMNK 151


>ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g26540 gi|9293933|dbj|BAB01836.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332643655|gb|AEE77176.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 700

 Score =  113 bits (283), Expect = 1e-23
 Identities = 52/96 (54%), Positives = 73/96 (76%)
 Frame = -1

Query: 293 IYARLFQQCSSERAVIEARILESHLVTYNPRRPVFLINRAIETYGKCGCLKDARGLFDDM 114
           +Y RLF+ CSS+  V++AR ++SHLVT++P  P+FL+NRAIE YGKCGC+ DAR LF++M
Sbjct: 63  LYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEM 122

Query: 113 RQRHLFDGGTWNAMITAYSQNGDGENALLVFWEMHR 6
            +R   DGG+WNA+ITA +QNG  +    +F  M+R
Sbjct: 123 PER---DGGSWNAVITACAQNGVSDEVFRMFRRMNR 155