BLASTX nr result

ID: Coptis23_contig00034735 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034735
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20302.3| unnamed protein product [Vitis vinifera]               61   1e-07
ref|XP_002282417.1| PREDICTED: uncharacterized protein LOC100246...    61   1e-07
emb|CAN74978.1| hypothetical protein VITISV_027198 [Vitis vinifera]    61   1e-07
ref|XP_002305132.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
gb|ABK95008.1| unknown [Populus trichocarpa]                           56   3e-06

>emb|CBI20302.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%)
 Frame = -2

Query: 309 RNFVVQAYHRDLLEHIAPPIATALHPPPILTKERPAKSSPVITTNRVERTPARKTPP 139
           RNFV QAYHRDLLEH+APP    +HPPP        +   VI  N   RTPARK PP
Sbjct: 459 RNFVYQAYHRDLLEHMAPP-PPVVHPPPRDVVIPGNRQGAVIPENVAGRTPARKNPP 514


>ref|XP_002282417.1| PREDICTED: uncharacterized protein LOC100246918 [Vitis vinifera]
          Length = 604

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%)
 Frame = -2

Query: 309 RNFVVQAYHRDLLEHIAPPIATALHPPPILTKERPAKSSPVITTNRVERTPARKTPP 139
           RNFV QAYHRDLLEH+APP    +HPPP        +   VI  N   RTPARK PP
Sbjct: 522 RNFVYQAYHRDLLEHMAPP-PPVVHPPPRDVVIPGNRQGAVIPENVAGRTPARKNPP 577


>emb|CAN74978.1| hypothetical protein VITISV_027198 [Vitis vinifera]
          Length = 616

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%)
 Frame = -2

Query: 309 RNFVVQAYHRDLLEHIAPPIATALHPPPILTKERPAKSSPVITTNRVERTPARKTPP 139
           RNFV QAYHRDLLEH+APP    +HPPP        +   VI  N   RTPARK PP
Sbjct: 534 RNFVYQAYHRDLLEHMAPP-PPVVHPPPRDVVIPGNRQGAVIPENVAGRTPARKNPP 589


>ref|XP_002305132.1| predicted protein [Populus trichocarpa] gi|222848096|gb|EEE85643.1|
           predicted protein [Populus trichocarpa]
          Length = 591

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
 Frame = -2

Query: 309 RNFVVQAYHRDLLEHIA---------PPIATALHP-PPILTKERPAKSSPVITTNRVERT 160
           RNFVVQ YHRD+LE +A         PP    L P PP+L  E P +++P  +T +V   
Sbjct: 501 RNFVVQKYHRDVLEQMAHPPPVYPPPPPSLLQLPPSPPVLVNEPPIQTTPETSTVKVIGA 560

Query: 159 PARKTPPXXXXXXXXXXXRKITAGTRD 79
           P RK P            RK+ AG +D
Sbjct: 561 PVRKAPARRGRRSGSRRHRKVVAGAKD 587


>gb|ABK95008.1| unknown [Populus trichocarpa]
          Length = 98

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
 Frame = -2

Query: 309 RNFVVQAYHRDLLEHIA---------PPIATALHP-PPILTKERPAKSSPVITTNRVERT 160
           RNFVVQ YHRD+LE +A         PP    L P PP+L  E P +++P  +T +V   
Sbjct: 8   RNFVVQKYHRDVLEQMAHPPPVYPPPPPSLLQLPPSPPVLVNEPPIQTTPETSTVKVIGA 67

Query: 159 PARKTPPXXXXXXXXXXXRKITAGTRD 79
           P RK P            RK+ AG +D
Sbjct: 68  PVRKAPARRGRRSGSRRHRKVVAGAKD 94


Top