BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034679
         (1255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containi...   412   e-113
ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|2...   412   e-112
ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containi...   410   e-112
ref|XP_003606459.1| Pentatricopeptide repeat-containing protein ...   397   e-108
ref|NP_180348.2| pentatricopeptide repeat-containing protein [Ar...   365   1e-98

>ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
           mitochondrial-like [Cucumis sativus]
          Length = 428

 Score =  412 bits (1059), Expect = e-113
 Identities = 195/285 (68%), Positives = 243/285 (85%), Gaps = 1/285 (0%)
 Frame = -3

Query: 854 EFERAAAQLPPRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGS 675
           +F+ A +++PPRF +E+L  +++L  D LVC ELFN+ASQQPRFRHD S+Y +TIKKLG 
Sbjct: 106 QFQLAVSKIPPRFTSEELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGE 165

Query: 674 AELYEEMDGVVNQVLAVPAIGLEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRPS 495
           A++YEEMD VVNQ LAV +IG E L+NT+IYF+TEARKL++A++++KHM+ + +  CRPS
Sbjct: 166 AKMYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPS 225

Query: 494 IRTYNLLFTSFLSKRSNTYINHLYMETIRSLFKQMVN-DGIEPDIFSMNSVIKGYVLSLH 318
           IRTYNLLFT+FLS+  NTYINH+YMETIR LF+QMVN DGIEPDIFS+N +IKGYVLSLH
Sbjct: 226 IRTYNLLFTAFLSRGRNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLH 285

Query: 317 VNDALRVFHQMGVVYSCHPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYN 138
           VNDALR+FHQMGVVYSC P+S+SY Y+IHGLC Q RT+NAKEL  EMK KGFVPS  +YN
Sbjct: 286 VNDALRIFHQMGVVYSCLPNSYSYDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYN 345

Query: 137 SLANSLAIIGEVEEAVRLLWEMNEKRKSADFITYRTVLDEICRQG 3
           S+ N+LA+ GEVE+AV  LWEM + R+S DFITY+TVLDE+CRQG
Sbjct: 346 SIVNALALNGEVEDAVNYLWEMIDNRRSPDFITYKTVLDELCRQG 390


>ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|222865910|gb|EEF03041.1|
            predicted protein [Populus trichocarpa]
          Length = 440

 Score =  412 bits (1058), Expect = e-112
 Identities = 211/387 (54%), Positives = 273/387 (70%), Gaps = 10/387 (2%)
 Frame = -3

Query: 1133 VLVNMISAIRKHLAPQCTKFPFQILRTPLLVSVSTYPVTVFKKRDIETVR---------- 984
            + ++  S I    +    KFPF IL    ++S    P T  K +D++ +           
Sbjct: 21   IFISPPSCINTFHSKNLAKFPFPILTQYSVISSYLNP-TARKLKDVDLLAQTQILPSSNF 79

Query: 983  STFYNTNLYLCTFNRYLSTXXXXXXXXXXXXXXXXXXXPNKVAEFERAAAQLPPRFIAED 804
            STFY+T     +F +  +                        A+F+R+ +QLP RF  E+
Sbjct: 80   STFYSTKAPSRSFRKRNNKRAKANSRPILDE-----------AKFQRSVSQLPSRFTNEE 128

Query: 803  LYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGSAELYEEMDGVVNQVLAV 624
            L   + L DD LVCLELFN+ASQQ RFRHD STYH+TIKKLG A++Y+EMD VVNQ+LAV
Sbjct: 129  LCNNITLEDDPLVCLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAV 188

Query: 623  PAIGLEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRPSIRTYNLLFTSFLSKRSN 444
            P IG EAL+N++IY++TEARKL++A++++K M+ S +  CRPSI+TYN+L T+ LS+  N
Sbjct: 189  PHIGNEALYNSIIYYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTYNILLTAMLSRGRN 248

Query: 443  TYINHLYMETIRSLFKQMVNDGIEPDIFSMNSVIKGYVLSLHVNDALRVFHQMGVVYSCH 264
            +YINH+YMET+R LFKQMV+DG+EPDIFS+NS+IKGY LSLHVNDALRVFHQMGVVY C 
Sbjct: 249  SYINHMYMETMRCLFKQMVDDGVEPDIFSLNSMIKGYALSLHVNDALRVFHQMGVVYKCL 308

Query: 263  PDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYNSLANSLAIIGEVEEAVRL 84
            P+S SY Y++HGLC QGRTNNA+EL+ EMK KGFV S K++NSL N+LA+ GEV EAV  
Sbjct: 309  PNSFSYDYLVHGLCAQGRTNNARELFDEMKEKGFVLSNKSFNSLVNALALGGEVGEAVNY 368

Query: 83   LWEMNEKRKSADFITYRTVLDEICRQG 3
            LWEM +K +S D ITY+TVLDEICRQG
Sbjct: 369  LWEMIDKHRSVDLITYKTVLDEICRQG 395


>ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
           mitochondrial-like [Cucumis sativus]
          Length = 428

 Score =  410 bits (1055), Expect = e-112
 Identities = 194/285 (68%), Positives = 243/285 (85%), Gaps = 1/285 (0%)
 Frame = -3

Query: 854 EFERAAAQLPPRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGS 675
           +F+ A +++PPRF +E+L  +++L  D LVC ELFN+ASQQPRFRHD S+Y +TIKKLG 
Sbjct: 106 QFQLAVSKIPPRFTSEELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGE 165

Query: 674 AELYEEMDGVVNQVLAVPAIGLEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRPS 495
           A++YEEMD VVNQ LAV +IG E L+NT+IYF+TEARKL++A++++KHM+ + +  CRPS
Sbjct: 166 AKMYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPS 225

Query: 494 IRTYNLLFTSFLSKRSNTYINHLYMETIRSLFKQMVN-DGIEPDIFSMNSVIKGYVLSLH 318
           IRTYNLLFT+FLS+  NTYINH+YMETIR LF+QMVN DGIEPDIFS+N +IKGYVLSLH
Sbjct: 226 IRTYNLLFTAFLSRGRNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLH 285

Query: 317 VNDALRVFHQMGVVYSCHPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYN 138
           VNDALR+FHQMGVVYSC P+S+S+ Y+IHGLC Q RT+NAKEL  EMK KGFVPS  +YN
Sbjct: 286 VNDALRIFHQMGVVYSCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYN 345

Query: 137 SLANSLAIIGEVEEAVRLLWEMNEKRKSADFITYRTVLDEICRQG 3
           S+ N+LA+ GEVE+AV  LWEM + R+S DFITY+TVLDE+CRQG
Sbjct: 346 SIVNALALNGEVEDAVNYLWEMIDNRRSPDFITYKTVLDELCRQG 390


>ref|XP_003606459.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355507514|gb|AES88656.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score =  397 bits (1019), Expect = e-108
 Identities = 193/286 (67%), Positives = 241/286 (84%), Gaps = 2/286 (0%)
 Frame = -3

Query: 854 EFERAAAQLPPRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGS 675
           +F+ A +QL PRF  E+L  ++    D LVCLELF++AS QPRFRH+ S++H+TIKKLG 
Sbjct: 83  KFQFAQSQLLPRFTPEELRNVIANQRDPLVCLELFHWASHQPRFRHNESSFHVTIKKLGD 142

Query: 674 AELYEEMDGVVNQVLAVPAIGLEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDE--GCR 501
           A++Y+EMD VVNQ+LAV +IG EALFN +IY++TEARKL++A+ V+KHM+ S +   G R
Sbjct: 143 AKMYQEMDDVVNQLLAVRSIGNEALFNMIIYYFTEARKLTRAVIVFKHMKCSRNPNFGFR 202

Query: 500 PSIRTYNLLFTSFLSKRSNTYINHLYMETIRSLFKQMVNDGIEPDIFSMNSVIKGYVLSL 321
           PSIRTYN+LF +FLS+  NT+IN +YMET+R LF+QMVN+ IEPDIFS+NS+IKGYVLSL
Sbjct: 203 PSIRTYNILFGAFLSRGYNTHINLVYMETMRCLFRQMVNEHIEPDIFSLNSMIKGYVLSL 262

Query: 320 HVNDALRVFHQMGVVYSCHPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAY 141
           HVNDALR+FHQMGVVY C P+S +Y Y+IHGLC +GRT NAKELY EMK+KGFVPS K+Y
Sbjct: 263 HVNDALRIFHQMGVVYDCKPNSLTYDYLIHGLCAKGRTENAKELYHEMKAKGFVPSSKSY 322

Query: 140 NSLANSLAIIGEVEEAVRLLWEMNEKRKSADFITYRTVLDEICRQG 3
           NSL NSLA++G+VEEAV  LWEM EK+KS DFITYRTVLDEICR+G
Sbjct: 323 NSLVNSLALVGDVEEAVNYLWEMTEKQKSVDFITYRTVLDEICRRG 368


>ref|NP_180348.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546772|sp|Q9ZUY1.2|PP173_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g27800, mitochondrial; Flags: Precursor
           gi|330252952|gb|AEC08046.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 442

 Score =  365 bits (938), Expect = 1e-98
 Identities = 162/286 (56%), Positives = 230/286 (80%)
 Frame = -3

Query: 860 VAEFERAAAQLPPRFIAEDLYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKL 681
           V++F    ++LPPRF  E+L   + L +D  +C  LFN+ASQQPRF H+  +YH+ I+KL
Sbjct: 123 VSKFHETISKLPPRFTPEELADAITLEEDPFLCFHLFNWASQQPRFTHENCSYHIAIRKL 182

Query: 680 GSAELYEEMDGVVNQVLAVPAIGLEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCR 501
           G+A++Y+EMD +VNQVL+V  IG E L+N++I+++T+A KL +A+++++HM  S +  CR
Sbjct: 183 GAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECR 242

Query: 500 PSIRTYNLLFTSFLSKRSNTYINHLYMETIRSLFKQMVNDGIEPDIFSMNSVIKGYVLSL 321
           P+IRTY++LF + L + +N+YINH+YMET+RSLF+QMV+ GIEPD+F++N ++KGYVLSL
Sbjct: 243 PTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSL 302

Query: 320 HVNDALRVFHQMGVVYSCHPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAY 141
           HVNDALR+FHQM VVY C P+S +Y Y+IHGLC QGRT NA+EL +EMK KGFVP+GK+Y
Sbjct: 303 HVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSY 362

Query: 140 NSLANSLAIIGEVEEAVRLLWEMNEKRKSADFITYRTVLDEICRQG 3
           NSL N+ A+ GE+++AV+ LWEM E  +  DFI+YRT++DE CR+G
Sbjct: 363 NSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKG 408