BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034611
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi...    94   7e-26
emb|CBI26127.3| unnamed protein product [Vitis vinifera]               94   7e-26
ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ...    92   6e-25
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,...    89   2e-23
ref|NP_181235.1| pentatricopeptide repeat-containing protein [Ar...    81   3e-19

>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score = 93.6 bits (231), Expect(2) = 7e-26
 Identities = 38/82 (46%), Positives = 58/82 (70%)
 Frame = -2

Query: 247 CALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCS 68
           C+LLFAY   G F+    VF+  P ++E+AWNI+++G+ +CG  E+C+ LFKKM+  +  
Sbjct: 141 CSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQ 200

Query: 67  PDVWTYTALMSACSELAEPFHG 2
           PD WT++AL++A  EL EP +G
Sbjct: 201 PDQWTFSALVNALCELQEPSYG 222



 Score = 48.5 bits (114), Expect(2) = 7e-26
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = -3

Query: 333 VDMYGKCLLPSRAGRVFEEMEQRNEVSWCAL 241
           +DMYGKCL  + A RVFEEM   NEVSWC+L
Sbjct: 113 IDMYGKCLSATSARRVFEEMSIMNEVSWCSL 143



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/75 (36%), Positives = 45/75 (60%)
 Frame = -2

Query: 238 LFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 59
           + A  K G   S  R+F++ P++  VAWN ++A +S+ G  +  + LF  M+ +   PD 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 58  WTYTALMSACSELAE 14
           +T+TA +SAC+ L E
Sbjct: 72  FTFTATLSACAGLGE 86



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = -2

Query: 244 ALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSP 65
           A++ A++K GD      VF   P +  V+W  ++ G++R G  E  ++ F KM  +   P
Sbjct: 274 AMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQP 333

Query: 64  DVWTYTALMSACSELAEPFHG 2
           D +T+ A++ ACS LA   HG
Sbjct: 334 DDFTFGAVLHACSSLATLGHG 354


>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score = 93.6 bits (231), Expect(2) = 7e-26
 Identities = 38/82 (46%), Positives = 58/82 (70%)
 Frame = -2

Query: 247 CALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCS 68
           C+LLFAY   G F+    VF+  P ++E+AWNI+++G+ +CG  E+C+ LFKKM+  +  
Sbjct: 141 CSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQ 200

Query: 67  PDVWTYTALMSACSELAEPFHG 2
           PD WT++AL++A  EL EP +G
Sbjct: 201 PDQWTFSALVNALCELQEPSYG 222



 Score = 48.5 bits (114), Expect(2) = 7e-26
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = -3

Query: 333 VDMYGKCLLPSRAGRVFEEMEQRNEVSWCAL 241
           +DMYGKCL  + A RVFEEM   NEVSWC+L
Sbjct: 113 IDMYGKCLSATSARRVFEEMSIMNEVSWCSL 143



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/75 (36%), Positives = 45/75 (60%)
 Frame = -2

Query: 238 LFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSPDV 59
           + A  K G   S  R+F++ P++  VAWN ++A +S+ G  +  + LF  M+ +   PD 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 58  WTYTALMSACSELAE 14
           +T+TA +SAC+ L E
Sbjct: 72  FTFTATLSACAGLGE 86



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = -2

Query: 244 ALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCSP 65
           A++ A++K GD      VF   P +  V+W  ++ G++R G  E  ++ F KM  +   P
Sbjct: 254 AMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQP 313

Query: 64  DVWTYTALMSACSELAEPFHG 2
           D +T+ A++ ACS LA   HG
Sbjct: 314 DDFTFGAVLHACSSLATLGHG 334


>ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510628|gb|AES91770.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 665

 Score = 92.4 bits (228), Expect(2) = 6e-25
 Identities = 38/82 (46%), Positives = 55/82 (67%)
 Frame = -2

Query: 247 CALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCS 68
           C+LLFAY     F+    +F   P ++E+AWNI++A  +RCG+ E C++LFK+M  +   
Sbjct: 142 CSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEMCENLYQ 201

Query: 67  PDVWTYTALMSACSELAEPFHG 2
           PD WT++ALMSAC+E  E  HG
Sbjct: 202 PDQWTFSALMSACTESMESLHG 223



 Score = 46.6 bits (109), Expect(2) = 6e-25
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -3

Query: 333 VDMYGKCLLPSRAGRVFEEMEQRNEVSWCAL 241
           +DMYGKC  P+ A +VF+EM   NEV+WC+L
Sbjct: 114 IDMYGKCFNPNDARKVFDEMNYSNEVTWCSL 144


>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score = 89.4 bits (220), Expect(2) = 2e-23
 Identities = 37/82 (45%), Positives = 54/82 (65%)
 Frame = -2

Query: 247 CALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCS 68
           C+LLFAY   G F     +FN  P + E+AWN ++AG  R G+ E+C+++F++M+ S   
Sbjct: 141 CSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLE 200

Query: 67  PDVWTYTALMSACSELAEPFHG 2
           PD WTY+AL+SAC+E  E   G
Sbjct: 201 PDQWTYSALISACTESLEFLSG 222



 Score = 44.7 bits (104), Expect(2) = 2e-23
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -3

Query: 333 VDMYGKCLLPSRAGRVFEEMEQRNEVSWCAL 241
           +DMYGKC     AG+VF+EM   NEVSWC+L
Sbjct: 113 IDMYGKCFDAFSAGQVFKEMGDINEVSWCSL 143


>ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g36980, mitochondrial; Flags: Precursor
           gi|4883614|gb|AAD31583.1| hypothetical protein
           [Arabidopsis thaliana] gi|330254236|gb|AEC09330.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 625

 Score = 80.9 bits (198), Expect(2) = 3e-19
 Identities = 34/74 (45%), Positives = 52/74 (70%)
 Frame = -2

Query: 247 CALLFAYVKFGDFESGCRVFNDTPNRIEVAWNILMAGFSRCGQTEMCMNLFKKMKASTCS 68
           C+LLFAY+    FE+   VF + P R+  AWNI+++G + CG+ E C++LFK+M  S   
Sbjct: 142 CSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFK 201

Query: 67  PDVWTYTALMSACS 26
           PD +T+++LM+ACS
Sbjct: 202 PDCYTFSSLMNACS 215



 Score = 38.9 bits (89), Expect(2) = 3e-19
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 333 VDMYGKCLLPSRAGRVFEEM--EQRNEVSWCAL 241
           +DMYGKC     A +VF +M  + RNEV+WC+L
Sbjct: 112 IDMYGKCSDTLSANKVFRDMCCDSRNEVTWCSL 144