BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034610
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516850.1| pentatricopeptide repeat-containing protein,...   155   2e-36
ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi...   154   6e-36
emb|CBI26127.3| unnamed protein product [Vitis vinifera]              154   6e-36
ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ...   152   4e-35
ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi...   144   6e-33

>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score =  155 bits (393), Expect = 2e-36
 Identities = 73/124 (58%), Positives = 91/124 (73%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           ARKLFDEM  RD V WN+M++SYS+LGF Q+ + +F  MR +  +PDHF+FT +LSA A 
Sbjct: 24  ARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHFTFTATLSACAG 83

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
           AG   FG K+HALV+  GY  S+PV NSL+DMYGKC     A +VF+EM   NEVSWC+L
Sbjct: 84  AGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCSL 143

Query: 361 LFAY 372
           LFAY
Sbjct: 144 LFAY 147



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 38/121 (31%), Positives = 67/121 (55%)
 Frame = +1

Query: 10  LFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASADAGE 189
           +F  + +++IV+W +M++ Y++ G+ ++ +  F  M  +   PD F+F   L A +    
Sbjct: 291 MFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAV 350

Query: 190 LHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFA 369
           L  GR VH   +R G+   + V N LV+MY KC     +   F ++  ++ VS+ ALLFA
Sbjct: 351 LGHGRMVHGCAIRNGFSTYLYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFA 410

Query: 370 Y 372
           +
Sbjct: 411 F 411



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/126 (30%), Positives = 73/126 (57%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           A ++F+ M ++  + WN M++   + G  +  +++F +MR S L PD ++++  +SA  +
Sbjct: 156 ASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYSALISACTE 215

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
           + E   G  +H LV+R G+  +M   NS++ +Y K    + A +V E   +  +VSW A+
Sbjct: 216 SLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVESTGRLTQVSWNAI 275

Query: 361 LFAYVK 378
           + AY+K
Sbjct: 276 IDAYMK 281


>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  154 bits (390), Expect = 6e-36
 Identities = 78/124 (62%), Positives = 91/124 (73%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           AR+LFDEM  +D V WNAML+SYS+LG  QQ + LF  MRI+  RPD F+FT +LSA A 
Sbjct: 24  ARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAG 83

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
            GEL  G K+HA VV  G Q S+PV NSL+DMYGKCL  + A RVFEEM   NEVSWC+L
Sbjct: 84  LGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSL 143

Query: 361 LFAY 372
           LFAY
Sbjct: 144 LFAY 147



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 35/119 (29%), Positives = 68/119 (57%)
 Frame = +1

Query: 10  LFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASADAGE 189
           +F    ++++V+W +M++ Y++ G  +Q +  F  M  + ++PD F+F   L A +    
Sbjct: 291 VFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLAT 350

Query: 190 LHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLF 366
           L  G+ +H  ++ +G+   + V N LV+MY KC     ++  F+E+  ++ VSW A+LF
Sbjct: 351 LGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLF 409



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/126 (30%), Positives = 70/126 (55%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           AR +FD M ++  + WN M+S Y + G  +  + LF  MR   L+PD ++F+  ++A  +
Sbjct: 156 ARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCE 215

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
             E  +G  +H  +++ G+  ++ V NS++  Y K        +VFE +    +VSW A+
Sbjct: 216 LQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAM 275

Query: 361 LFAYVK 378
           + A++K
Sbjct: 276 IDAHMK 281


>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  154 bits (390), Expect = 6e-36
 Identities = 78/124 (62%), Positives = 91/124 (73%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           AR+LFDEM  +D V WNAML+SYS+LG  QQ + LF  MRI+  RPD F+FT +LSA A 
Sbjct: 24  ARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAG 83

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
            GEL  G K+HA VV  G Q S+PV NSL+DMYGKCL  + A RVFEEM   NEVSWC+L
Sbjct: 84  LGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSL 143

Query: 361 LFAY 372
           LFAY
Sbjct: 144 LFAY 147



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 35/119 (29%), Positives = 68/119 (57%)
 Frame = +1

Query: 10  LFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASADAGE 189
           +F    ++++V+W +M++ Y++ G  +Q +  F  M  + ++PD F+F   L A +    
Sbjct: 271 VFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLAT 330

Query: 190 LHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLF 366
           L  G+ +H  ++ +G+   + V N LV+MY KC     ++  F+E+  ++ VSW A+LF
Sbjct: 331 LGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLF 389



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           AR +FD M ++  + WN M+S Y + G  +  + LF  MR   L+PD ++F+  ++A  +
Sbjct: 156 ARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCE 215

Query: 181 AGELHFGRKVHALVVRFGYQFSMPV-----------CNSLVDMYGKCLLPSRASRVFEEM 327
             E  +G  +H  +++ G+   M V            N+++D + K      A  VF+  
Sbjct: 216 LQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLA 275

Query: 328 EQRNEVSWCALLFAYVK 378
            ++N VSW +++  Y +
Sbjct: 276 PEKNVVSWTSMITGYAR 292


>ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510628|gb|AES91770.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  152 bits (383), Expect = 4e-35
 Identities = 71/125 (56%), Positives = 96/125 (76%), Gaps = 1/125 (0%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMR-ISGLRPDHFSFTVSLSASA 177
           ARKLFDEM +RD V WNAML++YS+LG  QQ  +LF  MR IS  +PD+FS++ ++++ A
Sbjct: 24  ARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSYSAAINSCA 83

Query: 178 DAGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCA 357
            A ++ FG K+H+LVV  GYQ S+PV N+L+DMYGKC  P+ A +VF+EM   NEV+WC+
Sbjct: 84  GASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFDEMNYSNEVTWCS 143

Query: 358 LLFAY 372
           LLFAY
Sbjct: 144 LLFAY 148



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 36/126 (28%), Positives = 71/126 (56%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           A ++F  M ++  + WN +++++++ G  +  + LF +M  +  +PD ++F+  +SA  +
Sbjct: 157 AFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTE 216

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
           + E   G  +H  V++ G+  +M V NS+V  Y K      A +VF      N+VSW A+
Sbjct: 217 SMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAI 276

Query: 361 LFAYVK 378
           + A++K
Sbjct: 277 IDAHMK 282



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/120 (28%), Positives = 61/120 (50%)
 Frame = +1

Query: 13  FDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASADAGEL 192
           F +  +++IV+W +M+  Y++ G     + LF DM+ +  + D       L A A    L
Sbjct: 293 FQQAPEKNIVSWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAIL 352

Query: 193 HFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAY 372
             G+ VH+ ++  G    + V NSL++MY KC     +      +  ++ VSW ++LFA+
Sbjct: 353 VHGKMVHSCIIHLGLDKYLFVGNSLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAF 412


>ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  144 bits (364), Expect = 6e-33
 Identities = 72/126 (57%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           ARKLFDE+  +D V WNAML++YS +G  QQ + LF  MRIS  +PD+FSF+  L+A A 
Sbjct: 24  ARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDNFSFSAVLNACAC 83

Query: 181 AGE--LHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWC 354
           AG   + FG  +HALVV  GY  S+PV NSL+DMYGKCLLP  A +VF+E    NEV+WC
Sbjct: 84  AGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKCLLPDDARKVFDETSDSNEVTWC 143

Query: 355 ALLFAY 372
           +L+FAY
Sbjct: 144 SLMFAY 149



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 40/126 (31%), Positives = 72/126 (57%)
 Frame = +1

Query: 1   ARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASAD 180
           A +LF  M +R ++ WN M+  +++ G  +  + LF +M  S  +PD ++F+  ++A A 
Sbjct: 158 ALELFRSMPERVVIAWNIMIVGHARRGEVEACLHLFKEMCGSLCQPDQWTFSALINACAV 217

Query: 181 AGELHFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCAL 360
           + E+ +G  VH  V++ G+  +M V NS++  Y K      A +VF      N+VSW A+
Sbjct: 218 SMEMLYGCMVHGFVIKSGWSSAMEVKNSMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAI 277

Query: 361 LFAYVK 378
           + A++K
Sbjct: 278 IDAHMK 283



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 36/120 (30%), Positives = 65/120 (54%)
 Frame = +1

Query: 13  FDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMRISGLRPDHFSFTVSLSASADAGEL 192
           F +  +R+IV+W +M++ Y++ G  +  + +F D+  + ++ D       L A A    L
Sbjct: 294 FQKAPERNIVSWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAIL 353

Query: 193 HFGRKVHALVVRFGYQFSMPVCNSLVDMYGKCLLPSRASRVFEEMEQRNEVSWCALLFAY 372
             GR VH  ++R G    + V NSLV+MY KC     +   F ++  ++ +SW ++LFA+
Sbjct: 354 VHGRMVHGCIIRHGLDKYLYVGNSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAF 413