BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034608
         (229 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321843.1| predicted protein [Populus trichocarpa] gi|1...    45   2e-06
ref|XP_002302530.1| predicted protein [Populus trichocarpa] gi|2...    47   2e-06
ref|NP_201036.1| 40S ribosomal protein S20-1 [Arabidopsis thalia...    45   4e-06
ref|XP_002866483.1| 40S ribosomal protein S20 [Arabidopsis lyrat...    45   4e-06
ref|XP_002866482.1| 40S ribosomal protein S20 [Arabidopsis lyrat...    45   4e-06

>ref|XP_002321843.1| predicted protein [Populus trichocarpa] gi|118484818|gb|ABK94276.1|
           unknown [Populus trichocarpa]
           gi|222868839|gb|EEF05970.1| predicted protein [Populus
           trichocarpa]
          Length = 123

 Score = 45.1 bits (105), Expect(2) = 2e-06
 Identities = 22/32 (68%), Positives = 24/32 (75%)
 Frame = -1

Query: 133 GAKTRTLKVKGSVRIPTKVLKITARNSTYGEG 38
           GAK + L+VKG VRIPTKVL IT R S  GEG
Sbjct: 47  GAKDKRLRVKGPVRIPTKVLNITTRKSPCGEG 78



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -3

Query: 227 EAYEDECIVLGSLSSKNINNLKKACTDLM 141
           EA E    +  +LSSKN+ NL+K CTDL+
Sbjct: 17  EAQEQIHKIRITLSSKNVKNLEKVCTDLV 45


>ref|XP_002302530.1| predicted protein [Populus trichocarpa] gi|222844256|gb|EEE81803.1|
           predicted protein [Populus trichocarpa]
          Length = 121

 Score = 47.0 bits (110), Expect(2) = 2e-06
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = -1

Query: 139 LSGAKTRTLKVKGSVRIPTKVLKITARNSTYGEG 38
           + GAK ++LKVKG VRIPTKVL+IT R +  GEG
Sbjct: 43  IRGAKDKSLKVKGPVRIPTKVLRITTRKAPCGEG 76



 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 227 EAYEDECI-VLGSLSSKNINNLKKACTDLM 141
           E Y D+   V  +LSSKN+ NL+K C DL+
Sbjct: 14  EEYHDQVQRVRITLSSKNVKNLEKVCADLI 43


>ref|NP_201036.1| 40S ribosomal protein S20-1 [Arabidopsis thaliana]
           gi|22331606|ref|NP_190089.2| 40S ribosomal protein S20-1
           [Arabidopsis thaliana] gi|145334871|ref|NP_001078781.1|
           40S ribosomal protein S20-1 [Arabidopsis thaliana]
           gi|21542443|sp|P49200.2|RS201_ARATH RecName: Full=40S
           ribosomal protein S20-1
           gi|11762182|gb|AAG40369.1|AF325017_1 AT5g62300
           [Arabidopsis thaliana]
           gi|13877519|gb|AAK43837.1|AF370460_1 40S ribosomal
           protein S20 [Arabidopsis thaliana]
           gi|20465624|gb|AAM20143.1| putative 40S ribsomomal
           protein [Arabidopsis thaliana]
           gi|21281054|gb|AAM45072.1| putative 40S ribsomomal
           protein [Arabidopsis thaliana]
           gi|21553799|gb|AAM62892.1| ribosomal protein S20-like
           protein [Arabidopsis thaliana]
           gi|332010210|gb|AED97593.1| 40S ribosomal protein S20-1
           [Arabidopsis thaliana] gi|332010211|gb|AED97594.1| 40S
           ribosomal protein S20-1 [Arabidopsis thaliana]
           gi|332644460|gb|AEE77981.1| 40S ribosomal protein S20-1
           [Arabidopsis thaliana]
          Length = 124

 Score = 44.7 bits (104), Expect(2) = 4e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -1

Query: 133 GAKTRTLKVKGSVRIPTKVLKITARNSTYGEG 38
           GAK + L+VKG VR+PTKVLKIT R +  GEG
Sbjct: 47  GAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78



 Score = 30.8 bits (68), Expect(2) = 4e-06
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 194 SLSSKNINNLKKACTDLM 141
           +LSSKN+ NL+K CTDL+
Sbjct: 28  TLSSKNVKNLEKVCTDLV 45


>ref|XP_002866483.1| 40S ribosomal protein S20 [Arabidopsis lyrata subsp. lyrata]
           gi|297312318|gb|EFH42742.1| 40S ribosomal protein S20
           [Arabidopsis lyrata subsp. lyrata]
          Length = 124

 Score = 44.7 bits (104), Expect(2) = 4e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -1

Query: 133 GAKTRTLKVKGSVRIPTKVLKITARNSTYGEG 38
           GAK + L+VKG VR+PTKVLKIT R +  GEG
Sbjct: 47  GAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78



 Score = 30.8 bits (68), Expect(2) = 4e-06
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 194 SLSSKNINNLKKACTDLM 141
           +LSSKN+ NL+K CTDL+
Sbjct: 28  TLSSKNVKNLEKVCTDLV 45


>ref|XP_002866482.1| 40S ribosomal protein S20 [Arabidopsis lyrata subsp. lyrata]
           gi|297312317|gb|EFH42741.1| 40S ribosomal protein S20
           [Arabidopsis lyrata subsp. lyrata]
          Length = 123

 Score = 44.7 bits (104), Expect(2) = 4e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -1

Query: 133 GAKTRTLKVKGSVRIPTKVLKITARNSTYGEG 38
           GAK + L+VKG VR+PTKVLKIT R +  GEG
Sbjct: 46  GAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 77



 Score = 30.8 bits (68), Expect(2) = 4e-06
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 194 SLSSKNINNLKKACTDLM 141
           +LSSKN+ NL+K CTDL+
Sbjct: 27  TLSSKNVKNLEKVCTDLV 44