BLASTX nr result
ID: Coptis23_contig00034511
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00034511
(818 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-l... 104 6e-34
ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-l... 104 6e-34
ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-l... 102 2e-33
ref|XP_002307525.1| predicted protein [Populus trichocarpa] gi|2... 97 4e-33
ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-l... 102 5e-33
>ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 88.2 bits (217), Expect(2) = 6e-34
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = -3
Query: 813 DEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGG-KPLY 637
DE LK LF +GT+ S VM D +G+SR FGFV F PD AA AV+ +NG TI + LY
Sbjct: 227 DEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLY 286
Query: 636 VALLQRKEDRAEIIAERKSKCEQERKSRLKKLQCANI 526
V QRK +R AE K+K EQER SR +KLQ AN+
Sbjct: 287 VGRAQRKAERE---AELKAKIEQERISRYEKLQGANL 320
Score = 82.8 bits (203), Expect(2) = 6e-34
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNLDDS +DEKLK LFSEFGT+ SCKVM+DS+G+S+G GFV+FST + A+KA+
Sbjct: 321 YLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKAL 375
Score = 72.0 bits (175), Expect(2) = 2e-22
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+++ L F FGTV+SCKV LDS GQS+G+GFV F + A A+K +NG I K +Y
Sbjct: 135 DNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVY 194
Query: 636 VALLQRKEDRAE 601
V L R+++R +
Sbjct: 195 VGLFIRRQEREQ 206
Score = 60.5 bits (145), Expect(2) = 2e-22
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNL ++ DE LKKLF +GT+ S VM D +G+SR FGFV F D+AA AV
Sbjct: 217 YVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAV 271
Score = 104 bits (259), Expect = 3e-20
Identities = 49/70 (70%), Positives = 61/70 (87%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+DEKLK LF EFGT+ SCKVM+DS+G+S+G GFV+FSTP+ A+KA+ EMNGK IG KPLY
Sbjct: 330 SDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLY 389
Query: 636 VALLQRKEDR 607
VA+ QRKE+R
Sbjct: 390 VAVAQRKEER 399
Score = 62.4 bits (150), Expect = 1e-07
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
+ KNLD S++++ L F+ FGTV SCKV LDS GQS+G+GFV F +AA A+
Sbjct: 126 FIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAI 180
>ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 88.2 bits (217), Expect(2) = 6e-34
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = -3
Query: 813 DEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGG-KPLY 637
DE LK LF +GT+ S VM D +G+SR FGFV F PD AA AV+ +NG TI + LY
Sbjct: 227 DEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLY 286
Query: 636 VALLQRKEDRAEIIAERKSKCEQERKSRLKKLQCANI 526
V QRK +R AE K+K EQER SR +KLQ AN+
Sbjct: 287 VGRAQRKAERE---AELKAKIEQERISRYEKLQGANL 320
Score = 82.8 bits (203), Expect(2) = 6e-34
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNLDDS +DEKLK LFSEFGT+ SCKVM+DS+G+S+G GFV+FST + A+KA+
Sbjct: 321 YLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKAL 375
Score = 72.0 bits (175), Expect(2) = 2e-22
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+++ L F FGTV+SCKV LDS GQS+G+GFV F + A A+K +NG I K +Y
Sbjct: 135 DNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVY 194
Query: 636 VALLQRKEDRAE 601
V L R+++R +
Sbjct: 195 VGLFIRRQEREQ 206
Score = 60.5 bits (145), Expect(2) = 2e-22
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNL ++ DE LKKLF +GT+ S VM D +G+SR FGFV F D+AA AV
Sbjct: 217 YVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAV 271
Score = 104 bits (259), Expect = 3e-20
Identities = 49/70 (70%), Positives = 61/70 (87%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+DEKLK LF EFGT+ SCKVM+DS+G+S+G GFV+FSTP+ A+KA+ EMNGK IG KPLY
Sbjct: 330 SDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLY 389
Query: 636 VALLQRKEDR 607
VA+ QRKE+R
Sbjct: 390 VAVAQRKEER 399
Score = 62.4 bits (150), Expect = 1e-07
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
+ KNLD S++++ L F+ FGTV SCKV LDS GQS+G+GFV F +AA A+
Sbjct: 126 FIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAI 180
>ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 86.3 bits (212), Expect(2) = 2e-33
Identities = 50/97 (51%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = -3
Query: 813 DEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIG-GKPLY 637
D+ LK LF GT+ S VM DS+G+S+ FGFV F D AA AV++++G +G K LY
Sbjct: 226 DDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLY 285
Query: 636 VALLQRKEDRAEIIAERKSKCEQERKSRLKKLQCANI 526
V QRK +R AE K+K EQERKSR +KLQ AN+
Sbjct: 286 VGRAQRKAERE---AELKAKFEQERKSRFEKLQGANL 319
Score = 82.8 bits (203), Expect(2) = 2e-33
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNLDD ++DEKLK+LFSE+GT+ SCKVMLD HG S+G GFVAFS+ D A KA+
Sbjct: 320 YIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKAL 374
Score = 102 bits (254), Expect = 1e-19
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+DEKLK LF E+GT+ SCKVMLD HG S+G GFVAFS+PD A KA+ EMNGK G KPLY
Sbjct: 329 DDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLY 388
Query: 636 VALLQRKEDR 607
VA+ QRKE+R
Sbjct: 389 VAVAQRKEER 398
Score = 64.7 bits (156), Expect(2) = 2e-19
Identities = 28/70 (40%), Positives = 48/70 (68%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+++ L+ F FGTV+SCKV +DS+GQS+G+GFV F + + A +++++NG + K +Y
Sbjct: 135 DNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVY 194
Query: 636 VALLQRKEDR 607
V R ++R
Sbjct: 195 VGHFIRHQER 204
Score = 57.4 bits (137), Expect(2) = 2e-19
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNL ++ D+ LK LF+ GT+ S VM DS+G+S+ FGFV F D+AA AV
Sbjct: 216 YVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAV 270
Score = 58.9 bits (141), Expect = 1e-06
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAA 372
+ KNLD S++++ L+ F+ FGTV SCKV +DS+GQS+G+GFV F + ++A
Sbjct: 126 FIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESA 176
>ref|XP_002307525.1| predicted protein [Populus trichocarpa] gi|222856974|gb|EEE94521.1|
predicted protein [Populus trichocarpa]
Length = 614
Score = 89.4 bits (220), Expect(2) = 4e-33
Identities = 47/97 (48%), Positives = 63/97 (64%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+DE LK F +G++ S VM D G+S+GFGFV F +PD AA AV+++NG T K Y
Sbjct: 214 SDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWY 273
Query: 636 VALLQRKEDRAEIIAERKSKCEQERKSRLKKLQCANI 526
V QRK +R AE K++ EQER SR +KL+ AN+
Sbjct: 274 VGRAQRKGERE---AELKARFEQERNSRYEKLKAANL 307
Score = 79.0 bits (193), Expect(2) = 4e-33
Identities = 36/55 (65%), Positives = 46/55 (83%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNLDD ++DEKLK+LFSEFG++ SCKVMLD G S+G GFVAFST + A++A+
Sbjct: 308 YLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRAL 362
Score = 64.7 bits (156), Expect(2) = 1e-20
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+++ L+ F FG V+SCKV +D++GQS+G+GFV F + A A+ +NG I K ++
Sbjct: 123 DNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVF 182
Query: 636 VALLQRKEDRAEIIAERK 583
V R ++R E K
Sbjct: 183 VGRFVRHQERIEATGSPK 200
Score = 61.6 bits (148), Expect(2) = 1e-20
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNL ++ +DE LKK FS +G++ S VM D G+S+GFGFV F + D+AA AV
Sbjct: 205 YVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAV 259
Score = 97.1 bits (240), Expect = 4e-18
Identities = 46/70 (65%), Positives = 57/70 (81%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+DEKLK LF EFG++ SCKVMLD G S+G GFVAFSTP+ A++A+ MNGK IG KPLY
Sbjct: 317 DDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLY 376
Query: 636 VALLQRKEDR 607
VA+ QR+E+R
Sbjct: 377 VAVAQRREER 386
Score = 60.5 bits (145), Expect = 4e-07
Identities = 26/55 (47%), Positives = 41/55 (74%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
+ KNLD S++++ L++ F+ FG V SCKV +D++GQS+G+GFV F +AA A+
Sbjct: 114 FIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAI 168
>ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 85.1 bits (209), Expect(2) = 5e-33
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = -3
Query: 813 DEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIG-GKPLY 637
D+ LK LF GT+ S VM DS+G+S+ FGFV F D AA AV++++G +G K LY
Sbjct: 226 DDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLY 285
Query: 636 VALLQRKEDRAEIIAERKSKCEQERKSRLKKLQCANI 526
V QRK +R AE ++K EQERKSR +KLQ AN+
Sbjct: 286 VGRAQRKAERE---AELRAKFEQERKSRFEKLQGANL 319
Score = 82.8 bits (203), Expect(2) = 5e-33
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNLDD ++DEKLK+LFSE+GT+ SCKVMLD HG S+G GFVAFS+ D A KA+
Sbjct: 320 YIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKAL 374
Score = 102 bits (254), Expect = 1e-19
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+DEKLK LF E+GT+ SCKVMLD HG S+G GFVAFS+PD A KA+ EMNGK G KPLY
Sbjct: 329 DDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLY 388
Query: 636 VALLQRKEDR 607
VA+ QRKE+R
Sbjct: 389 VAVAQRKEER 398
Score = 64.7 bits (156), Expect(2) = 2e-19
Identities = 28/70 (40%), Positives = 48/70 (68%)
Frame = -3
Query: 816 NDEKLKMLFCEFGTVMSCKVMLDSHGQSRGFGFVAFSTPDGAAKAVKEMNGKTIGGKPLY 637
+++ L+ F FGTV+SCKV +DS+GQS+G+GFV F + + A +++++NG + K +Y
Sbjct: 135 DNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVY 194
Query: 636 VALLQRKEDR 607
V R ++R
Sbjct: 195 VGHFIRHQER 204
Score = 57.4 bits (137), Expect(2) = 2e-19
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAAAKAV 360
Y KNL ++ D+ LK LF+ GT+ S VM DS+G+S+ FGFV F D+AA AV
Sbjct: 216 YVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAV 270
Score = 58.9 bits (141), Expect = 1e-06
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = -1
Query: 524 YFKNLDDSLNDEKLKKLFSEFGTVPSCKVMLDSHGQSRGFGFVAFSTLDAA 372
+ KNLD S++++ L+ F+ FGTV SCKV +DS+GQS+G+GFV F + ++A
Sbjct: 126 FIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESA 176