BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034503
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF81447.1| NBS type disease resistance protein [Populus tric...   133   1e-29
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...   113   2e-26
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   122   2e-26
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   122   2e-26
gb|ABR16288.1| unknown [Picea sitchensis]                             122   2e-26

>gb|ABF81447.1| NBS type disease resistance protein [Populus trichocarpa]
          Length = 972

 Score =  133 bits (335), Expect = 1e-29
 Identities = 61/96 (63%), Positives = 76/96 (79%)
 Frame = +1

Query: 16  VSPAYYRSSVGILRYLTSTRSDIVFGVGVISRFMETPSQAHLLAGKRILRYVKGTMSHGI 195
           V P Y++S VG LRYLT TR DI++GVG++SR+METP Q+HL A KRILRY+KGTM+ G+
Sbjct: 268 VDPTYFKSLVGSLRYLTCTRPDILYGVGLVSRYMETPDQSHLNAAKRILRYIKGTMNEGM 327

Query: 196 FYASGGHCELVGYTDSDWAGDIDKRKSTSSFVFHMG 303
           FY S     LVGY+DSDW  D+D+RKST+ FVF MG
Sbjct: 328 FYTSSKDFNLVGYSDSDWGRDLDERKSTTGFVFFMG 363


>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108708461|gb|ABF96256.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1167

 Score =  113 bits (283), Expect(2) = 2e-26
 Identities = 52/101 (51%), Positives = 70/101 (69%)
 Frame = +1

Query: 1    DNSELVSPAYYRSSVGILRYLTSTRSDIVFGVGVISRFMETPSQAHLLAGKRILRYVKGT 180
            D ++ V P  YRS VG L YLT+TR DI+F   ++SR+M +PSQ +  A KR+LRY+KGT
Sbjct: 956  DGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGT 1015

Query: 181  MSHGIFYASGGHCELVGYTDSDWAGDIDKRKSTSSFVFHMG 303
              +GI+Y      +L+GYTDSDWAG +D  KSTS + F +G
Sbjct: 1016 ADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLG 1056



 Score = 30.8 bits (68), Expect(2) = 2e-26
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 423  LHHNQALPTTIYCDNKSAITLTK 491
            L   Q  PTTIYCD+KSAI +++
Sbjct: 1082 LGEKQYQPTTIYCDSKSAIAISE 1104


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/101 (55%), Positives = 75/101 (74%)
 Frame = +1

Query: 1    DNSELVSPAYYRSSVGILRYLTSTRSDIVFGVGVISRFMETPSQAHLLAGKRILRYVKGT 180
            +  E V P  ++S VG LRYLT TR DI++ VGV+SR+ME P+  H  A KRILRY+KGT
Sbjct: 1116 EEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGT 1175

Query: 181  MSHGIFYASGGHCELVGYTDSDWAGDIDKRKSTSSFVFHMG 303
            ++ G+ Y++    +LVGY+DSDW GD+D RKSTS FVF++G
Sbjct: 1176 VNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIG 1216


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/101 (55%), Positives = 75/101 (74%)
 Frame = +1

Query: 1    DNSELVSPAYYRSSVGILRYLTSTRSDIVFGVGVISRFMETPSQAHLLAGKRILRYVKGT 180
            +  E V P  ++S VG LRYLT TR DI++ VGV+SR+ME P+  H  A KRILRY+KGT
Sbjct: 1084 EEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGT 1143

Query: 181  MSHGIFYASGGHCELVGYTDSDWAGDIDKRKSTSSFVFHMG 303
            ++ G+ Y++    +LVGY+DSDW GD+D RKSTS FVF++G
Sbjct: 1144 VNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIG 1184


>gb|ABR16288.1| unknown [Picea sitchensis]
          Length = 363

 Score =  122 bits (307), Expect = 2e-26
 Identities = 55/91 (60%), Positives = 72/91 (79%)
 Frame = +1

Query: 31  YRSSVGILRYLTSTRSDIVFGVGVISRFMETPSQAHLLAGKRILRYVKGTMSHGIFYASG 210
           +R  VG L YLT+TR DI++GV +ISRFM+TP  +H  AGKR+LRY+ GTM+HGI Y++ 
Sbjct: 272 FRKLVGSLMYLTATRPDIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAGTMNHGILYSTS 331

Query: 211 GHCELVGYTDSDWAGDIDKRKSTSSFVFHMG 303
            + +LVGYTDSD+AG ID RKSTS + FH+G
Sbjct: 332 NNLQLVGYTDSDFAGSIDDRKSTSGYAFHLG 362