BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034498
         (580 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB75484.1| putative protein [Arabidopsis thaliana]                60   2e-09
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    56   4e-09
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...    59   5e-09
gb|AAB48345.1| reverse transcriptase, partial [Arabidopsis thali...    58   1e-08
pir||S65820 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N4)...    58   1e-08

>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 60.1 bits (144), Expect(2) = 2e-09
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = +3

Query: 213 HFEEYLNHTFICLIPKSQAPSKVKDYMPIVFVMSLTK*FLRFWPINL---LLKSISPNQG 383
           H +  +NHT IC+IPK Q P  + DY PI     L K   +     L   L   +S +Q 
Sbjct: 100 HMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQA 159

Query: 384 AFAPNRSRGDNVDVVHEIIHKIKHVRNMNK 473
           AF P R   DNV + HEI+H +K  + ++K
Sbjct: 160 AFIPGRIINDNVMIAHEIMHSLKVRKRVSK 189



 Score = 26.9 bits (58), Expect(2) = 2e-09
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 497 DMSKAYDRVEW 529
           D+SKAYDRVEW
Sbjct: 197 DVSKAYDRVEW 207


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 55.8 bits (133), Expect(2) = 4e-09
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
 Frame = +3

Query: 228 LNHTFICLIPKSQAPSKVKDYMPIVFVMSLTK*FLRFWPINL---LLKSISPNQGAFAPN 398
           +NHT I LIPK + P+   ++ PI     + K   +   I L   L + +S NQ AF P 
Sbjct: 488 INHTNIALIPKVKNPTTPAEFRPIALCNVVYKLVSKALVIRLKDFLPRLVSENQSAFVPG 547

Query: 399 RSRGDNVDVVHEIIHKIKHVRNMNKKGLIAL 491
           R   DN  +  E+ H +KH RN ++KG IA+
Sbjct: 548 RLITDNALIAMEVFHSMKH-RNRSRKGTIAM 577



 Score = 30.0 bits (66), Expect(2) = 4e-09
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 494 LDMSKAYDRVEW 529
           LDMSKAYDRVEW
Sbjct: 579 LDMSKAYDRVEW 590


>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 58.5 bits (140), Expect(2) = 5e-09
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +3

Query: 228 LNHTFICLIPKSQAPSKVKDYMPIVFVMSLTK*FLRFWPINL---LLKSISPNQGAFAPN 398
           +NHT + LIPK  AP KV DY PI       K   +     L   L   IS NQ AF P 
Sbjct: 460 INHTHVRLIPKIPAPQKVSDYRPIALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQ 519

Query: 399 RSRGDNVDVVHEIIHKIKH 455
           R+  DNV + HE +H +K+
Sbjct: 520 RAISDNVLITHEALHYLKN 538



 Score = 27.3 bits (59), Expect(2) = 5e-09
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 497 DMSKAYDRVEW 529
           DMSKAYDR+EW
Sbjct: 552 DMSKAYDRLEW 562


>gb|AAB48345.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 195

 Score = 57.8 bits (138), Expect(2) = 1e-08
 Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
 Frame = +3

Query: 207 TLHFEEYLNHTFICLIPKSQAPSKVKDYMPI----VFVMSLTK*FL-RFWPINLLLKSIS 371
           TLH    +N TF+ LIPK QAP KV DY PI    V+   ++K    R  P  LL K +S
Sbjct: 31  TLHHN--VNETFVRLIPKIQAPKKVTDYKPIALCNVYFKIISKILTQRLKP--LLHKLVS 86

Query: 372 PNQGAFAPNRSRGDNVDVVHEIIHKIK 452
            NQ AF   R+  DNV + HE +H +K
Sbjct: 87  DNQSAFLAGRAIADNVLITHETLHFLK 113



 Score = 26.6 bits (57), Expect(2) = 1e-08
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 500 MSKAYDRVEWA 532
           MSKAYDRVEW+
Sbjct: 129 MSKAYDRVEWS 139


>pir||S65820 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N4) - Arabidopsis
           thaliana retrotransposon Ta21 (fragment)
          Length = 180

 Score = 57.8 bits (138), Expect(2) = 1e-08
 Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
 Frame = +3

Query: 207 TLHFEEYLNHTFICLIPKSQAPSKVKDYMPI----VFVMSLTK*FL-RFWPINLLLKSIS 371
           TLH    +N TF+ LIPK QAP KV DY PI    V+   ++K    R  P  LL K +S
Sbjct: 25  TLHHN--VNETFVRLIPKIQAPKKVTDYKPIALCNVYFKIISKILTQRLKP--LLHKLVS 80

Query: 372 PNQGAFAPNRSRGDNVDVVHEIIHKIK 452
            NQ AF   R+  DNV + HE +H +K
Sbjct: 81  DNQSAFLAGRAIADNVLITHETLHFLK 107



 Score = 26.6 bits (57), Expect(2) = 1e-08
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 500 MSKAYDRVEWA 532
           MSKAYDRVEW+
Sbjct: 123 MSKAYDRVEWS 133