BLASTX nr result

ID: Coptis23_contig00034493 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034493
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279298.1| PREDICTED: uncharacterized protein LOC100240...   191   5e-47
ref|XP_003591176.1| hypothetical protein MTR_1g083600 [Medicago ...   180   9e-44
ref|XP_002319500.1| predicted protein [Populus trichocarpa] gi|2...   180   9e-44
gb|ABD28339.2| TPR repeat [Medicago truncatula]                       180   9e-44
ref|XP_004144772.1| PREDICTED: uncharacterized protein LOC101209...   179   2e-43

>ref|XP_002279298.1| PREDICTED: uncharacterized protein LOC100240883 [Vitis vinifera]
           gi|296089711|emb|CBI39530.3| unnamed protein product
           [Vitis vinifera]
          Length = 270

 Score =  191 bits (485), Expect = 5e-47
 Identities = 93/115 (80%), Positives = 102/115 (88%)
 Frame = +1

Query: 40  HKNLTLFSSIKRFLVLPSVSGIWNTITGVGGSSQEALLAIRRGMLLFRQGDVPGSLVEFD 219
           H + T F S+ R L LPSVSGIWN +TG G S +E+ +AIRRGMLLFRQGDV GSLVEFD
Sbjct: 50  HSHQTPFHSLSRRLFLPSVSGIWNALTG-GDSYRESAMAIRRGMLLFRQGDVSGSLVEFD 108

Query: 220 RAIELDPRQKAYLWQRGLTLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 384
           +AIELDPRQKAYLWQRGL+LYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEA
Sbjct: 109 KAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEA 163


>ref|XP_003591176.1| hypothetical protein MTR_1g083600 [Medicago truncatula]
           gi|355480224|gb|AES61427.1| hypothetical protein
           MTR_1g083600 [Medicago truncatula]
           gi|388510044|gb|AFK43088.1| unknown [Medicago
           truncatula]
          Length = 265

 Score =  180 bits (457), Expect = 9e-44
 Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
 Frame = +1

Query: 61  SSIKRFLVLPSVSGIWNTITGVGGSSQ--EALLAIRRGMLLFRQGDVPGSLVEFDRAIEL 234
           S++ R L LPSVSGIW+ ITG  G++   EALLAIRRGM LFRQG+V GS+VEFD+AI+L
Sbjct: 49  SNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQL 108

Query: 235 DPRQKAYLWQRGLTLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 384
           DPRQKAYLWQRGL+LYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEA
Sbjct: 109 DPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEA 158


>ref|XP_002319500.1| predicted protein [Populus trichocarpa] gi|222857876|gb|EEE95423.1|
           predicted protein [Populus trichocarpa]
          Length = 271

 Score =  180 bits (457), Expect = 9e-44
 Identities = 89/127 (70%), Positives = 102/127 (80%)
 Frame = +1

Query: 4   SYGFSPSKKMPYHKNLTLFSSIKRFLVLPSVSGIWNTITGVGGSSQEALLAIRRGMLLFR 183
           S+ FS +     H       +  R L LPSVSGIW+ +TG   + +EA++AIRRGMLLFR
Sbjct: 38  SHFFSTNIPSRIHNLQNPLPTFTRRLFLPSVSGIWDALTGGNNNPREAVMAIRRGMLLFR 97

Query: 184 QGDVPGSLVEFDRAIELDPRQKAYLWQRGLTLYYLDRFEEGAEQFRIDVAQNPNDTEESI 363
           QGDV GSLVEFD+AIELD RQKAYLWQRGL+LYY+DRFEEGA+QFRIDVAQNPNDTEESI
Sbjct: 98  QGDVLGSLVEFDKAIELDTRQKAYLWQRGLSLYYVDRFEEGAQQFRIDVAQNPNDTEESI 157

Query: 364 WCFLCEA 384
           WCFLCEA
Sbjct: 158 WCFLCEA 164


>gb|ABD28339.2| TPR repeat [Medicago truncatula]
          Length = 263

 Score =  180 bits (457), Expect = 9e-44
 Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
 Frame = +1

Query: 61  SSIKRFLVLPSVSGIWNTITGVGGSSQ--EALLAIRRGMLLFRQGDVPGSLVEFDRAIEL 234
           S++ R L LPSVSGIW+ ITG  G++   EALLAIRRGM LFRQG+V GS+VEFD+AI+L
Sbjct: 49  SNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQL 108

Query: 235 DPRQKAYLWQRGLTLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 384
           DPRQKAYLWQRGL+LYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEA
Sbjct: 109 DPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEA 158


>ref|XP_004144772.1| PREDICTED: uncharacterized protein LOC101209381 [Cucumis sativus]
          Length = 267

 Score =  179 bits (455), Expect = 2e-43
 Identities = 86/107 (80%), Positives = 97/107 (90%)
 Frame = +1

Query: 64  SIKRFLVLPSVSGIWNTITGVGGSSQEALLAIRRGMLLFRQGDVPGSLVEFDRAIELDPR 243
           S+ R L +PSVSGIW+ +TG G + ++A+ AIRRGMLLFRQGDV GSL EFD+AIELDPR
Sbjct: 55  SLSRRLFVPSVSGIWDALTG-GNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPR 113

Query: 244 QKAYLWQRGLTLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 384
           QKAYLWQRGL+LYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEA
Sbjct: 114 QKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEA 160


Top