BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034455
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   201   5e-50
emb|CBI40853.3| unnamed protein product [Vitis vinifera]              197   1e-48
ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago t...   192   3e-47
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...   189   2e-46
gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygr...   174   5e-42

>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like
            [Vitis vinifera]
          Length = 751

 Score =  201 bits (511), Expect = 5e-50
 Identities = 91/132 (68%), Positives = 108/132 (81%)
 Frame = +3

Query: 3    WIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVSQDLNEKEKERSL 182
            W++V++E+ TFMAGD SHP   +I E+LE L E++K LGYVPDT FV QDL+E++K RSL
Sbjct: 620  WVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSL 679

Query: 183  NYHSEKLAIAFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRFHH 362
             YHSEKLA+AF L  S  K T IRI KNLRVCGDCHTW+K+VSK VGR+IIARD KRFHH
Sbjct: 680  YYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHH 739

Query: 363  FREGMCSCGDYW 398
            FR G+CSCGDYW
Sbjct: 740  FRNGLCSCGDYW 751


>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  197 bits (500), Expect = 1e-48
 Identities = 90/131 (68%), Positives = 107/131 (81%)
 Frame = +3

Query: 3   WIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVSQDLNEKEKERSL 182
           W++V++E+ TFMAGD SHP   +I E+LE L E++K LGYVPDT FV QDL+E++K RSL
Sbjct: 589 WVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSL 648

Query: 183 NYHSEKLAIAFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRFHH 362
            YHSEKLA+AF L  S  K T IRI KNLRVCGDCHTW+K+VSK VGR+IIARD KRFHH
Sbjct: 649 YYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHH 708

Query: 363 FREGMCSCGDY 395
           FR G+CSCGDY
Sbjct: 709 FRNGLCSCGDY 719


>ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355514334|gb|AES95957.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 676

 Score =  192 bits (487), Expect = 3e-47
 Identities = 89/132 (67%), Positives = 104/132 (78%)
 Frame = +3

Query: 3   WIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVSQDLNEKEKERSL 182
           W+++D+EV TFMAGDLSHPRA EI E L  L E++  LGY PDT FV QDL E++K  +L
Sbjct: 545 WVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISAL 604

Query: 183 NYHSEKLAIAFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRFHH 362
            YHSEKLAIAF L  +  K T IRIFKNLRVCGDCH+WIK+VS   GR+IIARDAKRFHH
Sbjct: 605 YYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHH 664

Query: 363 FREGMCSCGDYW 398
           F+ G+CSC DYW
Sbjct: 665 FKGGICSCKDYW 676


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  189 bits (481), Expect = 2e-46
 Identities = 87/132 (65%), Positives = 107/132 (81%)
 Frame = +3

Query: 3   WIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVSQDLNEKEKERSL 182
           W++VD+EV TFMAGDLSHPR+ EI E L  L +++K LGY P+T FV QDL+E++K  SL
Sbjct: 545 WVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSL 604

Query: 183 NYHSEKLAIAFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRFHH 362
            YHSEKLAIA+ L  +  +TT IRIFKNLRVCGDCH+WIK+VS   GR+IIARD+KRFHH
Sbjct: 605 YYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHH 664

Query: 363 FREGMCSCGDYW 398
           F+ G+CSC DYW
Sbjct: 665 FKGGLCSCKDYW 676


>gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  174 bits (442), Expect = 5e-42
 Identities = 84/132 (63%), Positives = 104/132 (78%)
 Frame = +3

Query: 3    WIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVSQDLNEKEKERSL 182
            WIEV  EV +F+AGD SHPR  EI  ELE L+++IK LGYVPDT FV  DL+++ KER++
Sbjct: 690  WIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAV 749

Query: 183  NYHSEKLAIAFGLLNSRNKTTCIRIFKNLRVCGDCHTWIKYVSKAVGREIIARDAKRFHH 362
             +HSEKLAIA+GL+++  +T  IR+ KNLRVC DCHT  K++SK  GREIIARDA RFHH
Sbjct: 750  CHHSEKLAIAYGLISTPPETP-IRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHH 808

Query: 363  FREGMCSCGDYW 398
            F+ G CSCGDYW
Sbjct: 809  FKNGECSCGDYW 820