BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034443
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,...   156   1e-36
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]   156   1e-36
ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containi...   152   4e-35
ref|XP_003610363.1| Pentatricopeptide repeat-containing protein ...   151   5e-35

>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
           protein product [Vitis vinifera]
          Length = 703

 Score =  159 bits (403), Expect = 2e-37
 Identities = 73/102 (71%), Positives = 88/102 (86%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L++AL+TFE   +KNS+TWSAMITGYAQ GDSDKAL+LFS M  SG+ PS+FT VGV
Sbjct: 257 CGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGV 316

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +NACS+  A  EGKQVHDY+LKLGFESQ+++ TALVDMYAKC
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/102 (41%), Positives = 67/102 (65%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           C ++ +A + F+ L E + V W++MI GY Q G+++ AL L+  M+  G+ P++ T+  V
Sbjct: 358 CSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASV 417

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           L ACS+ +A+ +GKQ+H   +K GF  +V I +AL  MYAKC
Sbjct: 418 LKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKC 459



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 39/101 (38%), Positives = 57/101 (56%)
 Frame = +3

Query: 6   GNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGVL 185
           G   EA + F+ + E+NSV+W+ MI+GYA    + +AL LF  M+      ++F    VL
Sbjct: 157 GLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVL 216

Query: 186 NACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +A +    +  GKQ+H   +K G  S V +  ALV MYAKC
Sbjct: 217 SALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKC 257



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKA--LRLFSEMQFSGLTPSKFTLV 176
           C  L EA   FE +  K+ V+W+ +I GY+Q G S  +  + LF  M+     P+  T  
Sbjct: 53  CQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFA 112

Query: 177 GVLNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAK 305
           GV  A S       G+  H   +K+     VF+ ++L++MY K
Sbjct: 113 GVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCK 155



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/73 (36%), Positives = 42/73 (57%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG L++    F  +  ++ ++W+AMI+G +Q G   +AL LF EMQ  G  P   T V +
Sbjct: 459 CGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNI 518

Query: 183 LNACSNASAIVEG 221
           L+ACS+   +  G
Sbjct: 519 LSACSHMGLVERG 531


>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 708

 Score =  156 bits (395), Expect = 1e-36
 Identities = 72/101 (71%), Positives = 90/101 (89%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L+++L+ FE+  +KNS+TWSAMITGYAQ GDS KAL+LFS M F+G+ PS+FTLVGV
Sbjct: 260 CGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGV 319

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAK 305
           LNACS+A A+ EGKQVH+Y+LKLGFESQ++I TALVDMYAK
Sbjct: 320 LNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAK 360



 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 42/101 (41%), Positives = 63/101 (62%)
 Frame = +3

Query: 6   GNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGVL 185
           G  E+A + F  L + + V W++MI GY Q G+++ AL L+  MQ  G+ P++ T+  VL
Sbjct: 362 GVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVL 421

Query: 186 NACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
            ACSN +A  +G+Q+H   +K G   +V I +AL  MYAKC
Sbjct: 422 KACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKC 462



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKA--LRLFSEMQFSGLTPSKFTLV 176
           C +L +A   F+ +  K+ ++W+ +I GY+Q G +  +  + LF  M+   + P+  T  
Sbjct: 56  CCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFS 115

Query: 177 GVLNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAK 305
           G+  A SN S+I  G+Q H   +K+     VF+ ++L++MY K
Sbjct: 116 GIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCK 158



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 37/101 (36%), Positives = 54/101 (53%)
 Frame = +3

Query: 6   GNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGVL 185
           G L EA   F+ + E+N VTW+ MI+GYA    + +A  +F  M+      ++F    VL
Sbjct: 160 GLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVL 219

Query: 186 NACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +A +    +  GKQ+H   +K G    + I  ALV MYAKC
Sbjct: 220 SALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKC 260



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CGNLEE    F  + E++ ++W+AMI+G +Q G   +AL LF EM+     P   T V V
Sbjct: 462 CGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNV 521

Query: 183 LNACSNASAIVEG 221
           L+ACS+   +  G
Sbjct: 522 LSACSHMGLVDSG 534


>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  156 bits (395), Expect = 1e-36
 Identities = 72/102 (70%), Positives = 87/102 (85%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L++AL+TFE   +KNS+TWSAMITG AQ GDSDKAL+LFS M  SG+ PS+FT VGV
Sbjct: 257 CGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGV 316

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +NACS+  A  EGKQVHDY+LKLGFESQ+++ TALVDMYAKC
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/102 (41%), Positives = 67/102 (65%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           C ++ +A + F+ L E + V W++MI GY Q G+++ AL L+  M+  G+ P++ T+  V
Sbjct: 358 CSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASV 417

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           L ACS+ +A+ +GKQ+H   +K GF  +V I +AL  MYAKC
Sbjct: 418 LKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKC 459



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 39/101 (38%), Positives = 57/101 (56%)
 Frame = +3

Query: 6   GNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGVL 185
           G   EA + F+ + E+NSV+W+ MI+GYA    + +AL LF  M+      ++F    VL
Sbjct: 157 GLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVL 216

Query: 186 NACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +A +    +  GKQ+H   +K G  S V +  ALV MYAKC
Sbjct: 217 SALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKC 257



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKA--LRLFSEMQFSGLTPSKFTLV 176
           C  L EA   FE +  K+ V+W+ +I GY+Q G S  +  + LF  M+     P+  T  
Sbjct: 53  CQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFA 112

Query: 177 GVLNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAK 305
           GV  A S       G+  H   +K+     VF+ ++L++MY K
Sbjct: 113 GVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCK 155



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/73 (36%), Positives = 42/73 (57%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG L++    F  +  ++ ++W+AMI+G +Q G   +AL LF EMQ  G  P   T V +
Sbjct: 459 CGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNI 518

Query: 183 LNACSNASAIVEG 221
           L+ACS+   +  G
Sbjct: 519 LSACSHMGLVERG 531


>ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  152 bits (383), Expect = 4e-35
 Identities = 71/102 (69%), Positives = 89/102 (87%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+LE+AL+TFEL G KNS+TWSAM+TG+AQ GDSDKAL+LF +M  SG  PS+FTLVGV
Sbjct: 267 CGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGV 326

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +NACS+A AIVEG+Q+H Y LKLG+E Q+++ +ALVDMYAKC
Sbjct: 327 INACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKC 368



 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 44/102 (43%), Positives = 68/102 (66%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG++ +A + FE + + + V W+++ITGY Q GD + AL L+ +MQ  G+ P+  T+  V
Sbjct: 368 CGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASV 427

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           L ACSN +A+ +GKQ+H  I+K  F  ++ I +AL  MYAKC
Sbjct: 428 LKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKC 469



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = +3

Query: 6   GNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQF--SGLTPSKFTLVG 179
           G + EA   F+ + E+N+V+W+ MI+GYA    +D+A  LF  M+    G   ++F    
Sbjct: 165 GLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTS 224

Query: 180 VLNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           VL+A +    +  G+QVH   +K G    V +  ALV MY KC
Sbjct: 225 VLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKC 267



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 25/73 (34%), Positives = 43/73 (58%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L++  R F  +  ++ ++W+AMI+G +Q G  ++ L LF +M   G  P   T V +
Sbjct: 469 CGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNL 528

Query: 183 LNACSNASAIVEG 221
           L+ACS+   +  G
Sbjct: 529 LSACSHMGLVDRG 541


>ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355511418|gb|AES92560.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  151 bits (382), Expect = 5e-35
 Identities = 67/102 (65%), Positives = 89/102 (87%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L++A+RTFE  G+KNS+TWSAM+TGYAQGGDSDKAL+LF++M  SG+ PS+FTLVGV
Sbjct: 267 CGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGV 326

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +NACS+  A+VEGKQ+H +  KLGF  Q+++ +A+VDMYAKC
Sbjct: 327 INACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKC 368



 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/102 (42%), Positives = 68/102 (66%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L +A + FE + + + V W+++ITGY Q GD +  L L+ +MQ   + P++ T+  V
Sbjct: 368 CGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASV 427

Query: 183 LNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           L ACS+ +A+ +GKQ+H  I+K GF+ +V I +AL  MY KC
Sbjct: 428 LRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKC 469



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 37/101 (36%), Positives = 61/101 (60%)
 Frame = +3

Query: 6   GNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGVL 185
           G + +A + F+ + E+N+V+W+ MI+GYA    +DKA+ +F  M+      ++F L  VL
Sbjct: 167 GFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVL 226

Query: 186 NACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAKC 308
           +A ++   +  G+QVH   +K G  + V +  ALV MYAKC
Sbjct: 227 SALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKC 267



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
 Frame = +3

Query: 9   NLEEALRTFELLGE--KNSVTWSAMITGYAQGGDSDK---ALRLFSEM-QFSGLTPSKFT 170
           +L  AL  F+ + +  K+ V+W+++I  ++Q   S     A+ LF  M + + + P+  T
Sbjct: 61  HLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHT 120

Query: 171 LVGVLNACSNASAIVEGKQVHDYILKLGFESQVFIRTALVDMYAK 305
           L GV +A SN S +V GKQ H   +K G    V++ ++L++MY K
Sbjct: 121 LAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCK 165



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/73 (35%), Positives = 44/73 (60%)
 Frame = +3

Query: 3   CGNLEEALRTFELLGEKNSVTWSAMITGYAQGGDSDKALRLFSEMQFSGLTPSKFTLVGV 182
           CG+L++    F  +  ++ ++W+AMI+G +Q G  +KAL LF +M   G+ P   T V +
Sbjct: 469 CGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNL 528

Query: 183 LNACSNASAIVEG 221
           L+ACS+   +  G
Sbjct: 529 LSACSHMGLVDRG 541