BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034280
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsu...   171   6e-41
ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containi...   171   6e-41
emb|CBI31119.3| unnamed protein product [Vitis vinifera]              171   6e-41
ref|XP_002327460.1| predicted protein [Populus trichocarpa] gi|2...   151   5e-35
ref|XP_002526196.1| pentatricopeptide repeat-containing protein,...   149   2e-34

>gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227462998|gb|ACP39951.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 532

 Score =  171 bits (433), Expect = 6e-41
 Identities = 80/107 (74%), Positives = 91/107 (85%)
 Frame = -1

Query: 321 VKDGRIEAAKILFDEMDERNAVSWSAMITGYVQVGMFKEALEHFNEMQLAGLRPNHAGIV 142
           VK G +E A+ LFD+M ERN VSWSAMITGYV +GMF+EALE FN++QL GLRPNHAGIV
Sbjct: 185 VKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIV 244

Query: 141 GALSACGFLGALDQGRWIHAYVDRYRFEFDRVLGTALIHMYAKCGCI 1
           GAL+AC +LG+LD GRWIHAYVDR   E DRVLGTAL+ MYAKCGCI
Sbjct: 245 GALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCI 291


>ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  171 bits (433), Expect = 6e-41
 Identities = 78/106 (73%), Positives = 90/106 (84%)
 Frame = -1

Query: 318 KDGRIEAAKILFDEMDERNAVSWSAMITGYVQVGMFKEALEHFNEMQLAGLRPNHAGIVG 139
           K G++  A+ LFDEM E+NAVSWSAMITGY Q+G+F+EALE FN+MQ+AG RPNH  IVG
Sbjct: 191 KSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVG 250

Query: 138 ALSACGFLGALDQGRWIHAYVDRYRFEFDRVLGTALIHMYAKCGCI 1
           AL+AC FLGALDQGRWIHAYVDR R   DR+LGTALI MYAKCGC+
Sbjct: 251 ALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCV 296


>emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  171 bits (433), Expect = 6e-41
 Identities = 78/106 (73%), Positives = 90/106 (84%)
 Frame = -1

Query: 318 KDGRIEAAKILFDEMDERNAVSWSAMITGYVQVGMFKEALEHFNEMQLAGLRPNHAGIVG 139
           K G++  A+ LFDEM E+NAVSWSAMITGY Q+G+F+EALE FN+MQ+AG RPNH  IVG
Sbjct: 166 KSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVG 225

Query: 138 ALSACGFLGALDQGRWIHAYVDRYRFEFDRVLGTALIHMYAKCGCI 1
           AL+AC FLGALDQGRWIHAYVDR R   DR+LGTALI MYAKCGC+
Sbjct: 226 ALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCV 271


>ref|XP_002327460.1| predicted protein [Populus trichocarpa] gi|222836014|gb|EEE74435.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score =  151 bits (382), Expect = 5e-35
 Identities = 75/135 (55%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
 Frame = -1

Query: 402 GISTLLKNMFQF-VTKPF*FFAC**AESVKDGRIEAAKILFDEMDERNAVSWSAMITGYV 226
           G   L +NMF   + +    + C  +  +  G++  A+ LFD M E+N VSW A+I GYV
Sbjct: 161 GFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYV 220

Query: 225 QVGMFKEALEHFNEMQLAGLRPNHAGIVGALSACGFLGALDQGRWIHAYVDRYRFEFDRV 46
           ++G FKEALE F +MQ++G R N A IVGAL+AC FLGALDQGRWIHAYV R+    DR+
Sbjct: 221 RIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRM 280

Query: 45  LGTALIHMYAKCGCI 1
           LGTALI MYAKCGCI
Sbjct: 281 LGTALIDMYAKCGCI 295



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
 Frame = -1

Query: 318 KDGRIEAAKILFDEMDERNAVSWSAMITGYVQVGMFKEALEHFNEMQLAGLRPNHAGIVG 139
           K G IE A  +FDEMD+R+  +++ +I+G       + A++ FN MQ  G+ PN    V 
Sbjct: 291 KCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVC 350

Query: 138 ALSACGFLGALDQG-RWIHAYVDRYRFE 58
            L+AC  +G +D+G R   +  +RY  E
Sbjct: 351 VLNACSRMGMVDEGLRIFESMSNRYVIE 378


>ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534500|gb|EEF36200.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  149 bits (377), Expect = 2e-34
 Identities = 70/107 (65%), Positives = 85/107 (79%)
 Frame = -1

Query: 321 VKDGRIEAAKILFDEMDERNAVSWSAMITGYVQVGMFKEALEHFNEMQLAGLRPNHAGIV 142
           V+ G++   + LFD+M ERN+VSWSAMITGYV+VG F+EALE FN M ++G  PNHAGIV
Sbjct: 188 VRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIV 247

Query: 141 GALSACGFLGALDQGRWIHAYVDRYRFEFDRVLGTALIHMYAKCGCI 1
            A++AC  LGALDQGRWIH Y+ R R + DRV+G ALI MYAKCGCI
Sbjct: 248 CAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCI 294