BLASTX nr result

ID: Coptis23_contig00034228 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034228
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67355.1| hypothetical protein VITISV_002170 [Vitis vinifera]    89   4e-16
ref|XP_004166967.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...    88   8e-16
emb|CAN83120.1| hypothetical protein VITISV_043394 [Vitis vinifera]    87   2e-15
emb|CAN77480.1| hypothetical protein VITISV_021632 [Vitis vinifera]    83   2e-14
emb|CAN65325.1| hypothetical protein VITISV_018101 [Vitis vinifera]    81   8e-14

>emb|CAN67355.1| hypothetical protein VITISV_002170 [Vitis vinifera]
          Length = 1385

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
 Frame = -3

Query: 351  LWKGIMNHKDMVERELSFKLGNGERIMFWDDKWCSQMPLKERFKDLYVISCNKSGTVHQR 172
            +WK IM   D    +++FK+G G +I FW D WC ++ L  RF  L++++  +S TV + 
Sbjct: 1126 VWKEIMKEADWCWDKMNFKVGKGTKIRFWKDXWCGEVELARRFPQLFIVAAQRSATVGEL 1185

Query: 171  VIWDNDVQSWDLKFRRNLLDRELLQICEFLDLLATQRV--NEDLDKWKWSGKVQPFTPK 1
               ++D+ SW+L+F R   D EL  + E L +L +QR+   EDL  WK  GK   F  K
Sbjct: 1186 WBHNSDLGSWNLRFSRGFNDWELNMVVELLQILRSQRITLEEDLALWK-GGKNGKFEVK 1243


>ref|XP_004166967.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101205453
           [Cucumis sativus]
          Length = 560

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = -3

Query: 351 LWKGIMNHKDMVERELSFKLGNGERIMFWDDKWCSQMPLKERFKDLYVISCNKSGTVHQR 172
           LW GI+ HK++  +  +F LG G +I FW D WC+  PL E+F +L+ +S NK   V+  
Sbjct: 41  LWAGILKHKEIFFKLSAFVLGEGTKISFWKDNWCAAEPLAEKFPNLFSLSLNKD--VYVA 98

Query: 171 VIWDNDVQSWDLKFRRNLLDRELLQICEFLDLLATQRVNEDLDKWKWSGKVQ-PFTPK 1
             W     SW+L  RRN+ D E+  +   L++L +   ++  D  KW+  V   FT K
Sbjct: 99  EYWCTATHSWNLGLRRNMFDNEIANVASILEILDSWVPSDGNDSLKWTPNVNGDFTTK 156


>emb|CAN83120.1| hypothetical protein VITISV_043394 [Vitis vinifera]
          Length = 1596

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
 Frame = -3

Query: 351  LWKGIMNHKDMVERELSFKLGNGERIMFWDDKWCSQMPLKERFKDLYVISCNKSGTVHQR 172
            +WK IM   D    +++FK+G G +I FW D WC ++ L  RF  L+ ++  +S TV + 
Sbjct: 1325 VWKEIMKEADWCWDKMNFKVGKGTKIRFWKDPWCGEVELARRFPQLFNVAAQRSATVGE- 1383

Query: 171  VIWD--NDVQSWDLKFRRNLLDRELLQICEFLDLLATQRV--NEDLDKWKWSGKVQPFTP 4
             +WD  +D+ SW+L+F R   D EL  + E L +L +QR+   EDL  WK  GK   F  
Sbjct: 1384 -LWDHNSDLGSWNLRFSRGFNDWELNMVDELLQILRSQRITLEEDLALWK-GGKNGKFEV 1441

Query: 3    K 1
            K
Sbjct: 1442 K 1442


>emb|CAN77480.1| hypothetical protein VITISV_021632 [Vitis vinifera]
          Length = 2706

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
 Frame = -3

Query: 351 LWKGIMNHKDMVERELSFKLGNGERIMFWDDKWCSQMPLKERFKDLYVISCNKSGTVHQR 172
           +WK +M   D    +++FK+G G ++ FW D WC ++    RF  L+ ++   S TV   
Sbjct: 225 VWKEVMKEADWCWDKMNFKVGKGTKVRFWKDPWCGEVEXARRFPQLFNMAAXXSATV--X 282

Query: 171 VIWDN--DVQSWDLKFRRNLLDRELLQICEFLDLLATQRV--NEDLDKWKWSGKVQPFTP 4
            +WD+  D+ SW+L+F R   D EL+ + E L +L  QR+   EDL  WK  GK   F  
Sbjct: 283 XLWDHNTDLXSWNLRFLRGFNDWELVMVAELLQILRNQRITMEEDLALWK-GGKNGKFEV 341

Query: 3   K 1
           K
Sbjct: 342 K 342



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = -3

Query: 351  LWKGIMNHKDMVERELSFKLGNGERIMFWDDKWCSQMPLKERFKDLYVISCNKSGTVHQR 172
            +WK I+         + FK+G G +I FW D WC    L + F +L+ ++ +++ TV + 
Sbjct: 2014 VWKEILKESTWCWENMGFKVGKGSKIRFWTDLWCGNSVLSQDFPNLFSMAAHRNVTVEE- 2072

Query: 171  VIWDNDV--QSWDLKFRRNLLDRELLQICEFLDLLATQRVNEDLDKWKW 31
              WD +     W L   R+L D E+  +   L +L    V  + D   W
Sbjct: 2073 -CWDQNTGQGGWILGLLRDLNDWEVGSVGNILAVLRDYSVTMEDDAVCW 2120


>emb|CAN65325.1| hypothetical protein VITISV_018101 [Vitis vinifera]
          Length = 306

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
 Frame = -3

Query: 351 LWKGIMNHKDMVERELSFKLGNGERIMFWDDKWCSQMPLKERFKDLYVISCNKSGTVHQR 172
           +WK I+   D     ++FK+G G RI FW+D WC  + L  RF  L+ ++  ++ TV  R
Sbjct: 139 VWKEILKEADWCWDNMTFKVGKGTRIRFWEDPWCGDVELSRRFPQLFTVAAQRNATV--R 196

Query: 171 VIWDND--VQSWDLKFRRNLLDRELLQICEFLDLLATQRVNEDLDKWKWSG 25
            +WD +     W+L+F R   D EL  + E L +L +QR+  + D   W G
Sbjct: 197 DMWDQNSGQGGWNLRFIRGFNDWELNMVGELLQILRSQRITLEEDSALWKG 247


Top