BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034174
         (297 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    94   9e-18
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    94   1e-17
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    93   2e-17
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    92   6e-17
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A...    89   3e-16

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 35/99 (35%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
 Frame = +3

Query: 3   NLSIYWLSSFVLPQKIVDDIDRLLRNFLWNGPDGATSHALLGWEQLCYPYEEGGLGIRNL 182
           ++ +YW S F+LP +++ ++++++++FLW+G D  T+ A + W+Q+C P +EGGLGI+++
Sbjct: 107 SIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSI 166

Query: 183 SILNHATNLKHIWHIVSGKE-TL*VNWVNKKLIKNRNFW 296
              N    LKHIW++ +  + ++   W+   L++ RNFW
Sbjct: 167 KEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFW 205


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 41/98 (41%), Positives = 63/98 (64%)
 Frame = +3

Query: 3    NLSIYWLSSFVLPQKIVDDIDRLLRNFLWNGPDGATSHALLGWEQLCYPYEEGGLGIRNL 182
            +++ +WLS F LP+  + +I+++   FLW+GPD  T  A + W ++C   EEGGLG++ L
Sbjct: 967  SITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPL 1026

Query: 183  SILNHATNLKHIWHIVSGKETL*VNWVNKKLIKNRNFW 296
               N  + LK IW I+S +++L V WVNK LI+   FW
Sbjct: 1027 KEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFW 1064


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/94 (43%), Positives = 61/94 (64%)
 Frame = +3

Query: 15  YWLSSFVLPQKIVDDIDRLLRNFLWNGPDGATSHALLGWEQLCYPYEEGGLGIRNLSILN 194
           +WLS+F LP++ V +ID+L   FLW+GP+ +T+ A + WE +C P  EGGLG++++   N
Sbjct: 342 FWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEAN 401

Query: 195 HATNLKHIWHIVSGKETL*VNWVNKKLIKNRNFW 296
               LK IW IVS  ++L V W+   L+K   FW
Sbjct: 402 DVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFW 435


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 41/94 (43%), Positives = 59/94 (62%)
 Frame = +3

Query: 15   YWLSSFVLPQKIVDDIDRLLRNFLWNGPDGATSHALLGWEQLCYPYEEGGLGIRNLSILN 194
            +WL +F LP++ + DID+L  +FLW+G D     A + W+ +C P +EGGLG+R+L   N
Sbjct: 781  FWLFAFRLPRECIRDIDKLCSSFLWSGQDLNPRKAKVSWDDVCKPKKEGGLGLRSLKEAN 840

Query: 195  HATNLKHIWHIVSGKETL*VNWVNKKLIKNRNFW 296
                LK +W IVS   +L V W+ K L+KN  FW
Sbjct: 841  DVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFW 874


>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
           [Cucumis sativus]
          Length = 647

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 37/98 (37%), Positives = 62/98 (63%)
 Frame = +3

Query: 3   NLSIYWLSSFVLPQKIVDDIDRLLRNFLWNGPDGATSHALLGWEQLCYPYEEGGLGIRNL 182
           +L +YW S F+LP K+  D+D++LR++LW G +     A + W+++C P++EGGL I + 
Sbjct: 272 SLQVYWASVFMLPMKVHKDVDKILRSYLWRGKEEGRGGAKVAWDEVCLPFDEGGLAICDG 331

Query: 183 SILNHATNLKHIWHIVSGKETL*VNWVNKKLIKNRNFW 296
           S  N A+ LK +W ++    +L V WV   ++K R+ W
Sbjct: 332 SSWNKASTLKILWLLLVKSGSLWVAWVEAYILKGRSLW 369